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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04725 ATGAAAAATGCTCTTCACGATATAGAAACAACCCTAATGGCCCCAGATGATGACGTCACCATGTCCATGACCCGTACGGGTCGACCCGGGTCCGACCTAAACCACTTGCTTATCGCGTGTGCAAGTGCTTTAGCAAGCAACAAGCTTGATGAGTTCGATGAATTAGTCGAACAAGCAAGGGCATTTGTGTCAATTAGCGGCGACCCGATTCAACGACTAGGCGCGTATATAGTCGAAGGGTTGGTAGCAAGAAAGGAATCTTCCGGAAACAATATTTATCGGGCTTTGAAATGTAAAGAGCCGTTAGGAGAAGAATTACTTTCGTACATGCATATTCTATACGAAATTTGCCCGTATTTAAAATTCGGGTACATGGCTGCAAACGGGGCGATAGCTGAAGCGGTTCGAACCGAAGACCGGATCCATATTATAGATTTCCAAATAGCCCAAAGCACCCAATGGATGACACTTCTACAAGCCCTAGCGGCCCGTCCAGGCGGGCCCCCACACGTGCGTATCACCGGAATCGACGATCCCGTTTCCAGATACGCACGTGGCGAGACTTTGGAATTGGTCGGGAAACGGTTGGAATTGGTTTCACAAAAGTTTAAAATCCCGATCGAGTTTCATCCGATTCAAGTATTCGCCCCGTTTGTGACTAAAGAAATGCTTGATATTCGGCCCGGGGAGGCCATCGCGGTCAATTTTGCCCTTCAATTACATCACATGGCGGATGAGAGCGTTGACTTGTCAAACCCTAGAGACGAGAGGTTACGAATGGTGAAGTCGTTGAATCCGAAAGTTGTTACGTTAGTTGAGCAAGAATCGAACACGAATACTGCGGCGTTCTTTCCGAGGTTTTTGGAGGTTTTGGATTATTACACTGCGATCTTCGAAAGTATTGATGCATCGTTACTGAGAGATAGGAAAAAGCAGATTAATGTTGAACAACATTGTTTGGCGAGAGATATTGTGAATATTATTGCGTGTGAAGGTAAGGAAAGAGTTGAAAGACATGAGTTGTTTATGAAGTGGAGGTCGCGGTTTATGATGGCGGGGTTTACGCAGTATCCATTGAGTTCGTATGTGAATTCGGTTATTAGGAGTCTTTTGAAACGTTATTCGGAGAATTATACGTTGGTTGAGAAAGATGGAGCTATGTTGTTGGGATGGAAGGAGAGAAATCTTATAGCGGCGTCTGCTTGGCATTAA 1212 45.3 MKNALHDIETTLMAPDDDVTMSMTRTGRPGSDLNHLLIACASALASNKLDEFDELVEQARAFVSISGDPIQRLGAYIVEGLVARKESSGNNIYRALKCKEPLGEELLSYMHILYEICPYLKFGYMAANGAIAEAVRTEDRIHIIDFQIAQSTQWMTLLQALAARPGGPPHVRITGIDDPVSRYARGETLELVGKRLELVSQKFKIPIEFHPIQVFAPFVTKEMLDIRPGEAIAVNFALQLHHMADESVDLSNPRDERLRMVKSLNPKVVTLVEQESNTNTAAFFPRFLEVLDYYTAIFESIDASLLRDRKKQINVEQHCLARDIVNIIACEGKERVERHELFMKWRSRFMMAGFTQYPLSSYVNSVIRSLLKRYSENYTLVEKDGAMLLGWKERNLIAASAWH 403
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04725 403 ProSiteProfiles GRAS family profile. 24 403 IPR005202 -
Cich4g04725 403 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 402 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cich4g04725 403 Pfam GRAS domain family 33 402 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04725 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1651127 Cich Cich4g04725 Cich-Chr4:135661229 Cich9g00163 Cich-Chr9:4523665
1670783 Cich Cich4g04725 Cich-Chr4:135661229 Cich1g01749 Cich-Chr1:34746470
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g00007 . 40 444 GRAS Transcription Factor family AT1G55580 49.057 6.58e-128 377.0
Cich9g00163 . 41 490 GRAS Transcription Factor family AT5G48150 66.667 0.0 608.0
Cich9g00231 . 144 506 GRAS Transcription Factor family AT1G66350 35.233 8.54e-75 244.0
Cich9g01756 . 293 416 GRAS Transcription Factor family AT1G55580 43.548 8.24e-23 94.0
Cich8g00782 . 26 530 GRAS Transcription Factor family AT1G14920 58.712 0.0 608.0
Cich8g01178 . 1 584 GRAS Transcription Factor family AT5G66770 57.167 0.0 582.0
Cich8g01188 ACH 37 485 GRAS Transcription Factor family AT4G36710 50.98 2.25e-140 412.0
Cich8g01279 ACH 1 530 GRAS Transcription Factor family AT4G37650 57.685 0.0 552.0
Cich8g01293 . 12 409 GRAS Transcription Factor family AT3G49950 61.151 0.0 513.0
Cich8g02087 . 141 530 GRAS Transcription Factor family AT4G37650 52.605 5.35e-140 409.0
Cich7g01011 . 40 444 GRAS Transcription Factor family AT1G55580 49.034 2.44e-121 359.0
Cich7g01516 . 340 419 GRAS Transcription Factor family AT2G01570 70.0 1.28e-29 110.0
Cich7g02642 . 212 266 GRAS Transcription Factor family AT1G50420 47.273 3.82e-13 62.0
Cich7g03157 . 545 651 GRAS Transcription Factor family AT3G54220 41.818 2.38e-19 81.6
Cich7g03293 . 92 555 GRAS Transcription Factor family AT4G00150 42.178 1.08e-107 333.0
Cich7g03529 . 85 555 GRAS Transcription Factor family AT4G00150 49.472 3.44e-162 476.0
Cich6g00218 . 31 640 GRAS Transcription Factor family AT5G52510 41.987 1.03e-127 388.0
Cich6g00713 . 86 767 GRAS Transcription Factor family AT1G07530 45.637 0.0 573.0
Cich6g02214 ACH 39 530 GRAS Transcription Factor family AT4G37650 56.66 0.0 520.0
Cich6g02292 ACH 37 486 GRAS Transcription Factor family AT4G36710 50.866 5.34e-140 411.0
Cich6g02324 . 39 129 GRAS Transcription Factor family AT5G17490 46.809 2.72e-15 68.6
Cich6g02534 . 45 545 GRAS Transcription Factor family AT3G03450 62.983 0.0 660.0
Cich6g03366 . 4 482 GRAS Transcription Factor family AT1G50420 63.257 0.0 603.0
Cich6g03825 . 187 256 GRAS Transcription Factor family AT4G36710 47.143 8.46e-14 65.5
Cich5g00192 . 17 593 GRAS Transcription Factor family AT1G21450 53.99 0.0 592.0
Cich5g00294 . 428 542 GRAS Transcription Factor family AT3G50650 34.4 6.44e-14 65.1
Cich5g00295 . 177 547 GRAS Transcription Factor family AT3G03450 34.43 2.95e-53 185.0
Cich5g01703 . 327 500 GRAS Transcription Factor family AT1G07530 32.184 7.54e-24 98.2
Cich5g01704 . 508 631 GRAS Transcription Factor family AT2G37650 52.419 1.32e-42 146.0
Cich5g02785 . 1 479 GRAS Transcription Factor family AT1G50420 62.292 0.0 587.0
Cich5g03180 . 1 479 GRAS Transcription Factor family AT1G50420 62.292 0.0 590.0
Cich4g00937 . 1 767 GRAS Transcription Factor family AT1G07530 46.563 0.0 624.0
Cich4g00938 . 300 764 GRAS Transcription Factor family AT1G07530 51.168 3.03e-169 499.0
Cich4g00940 . 328 768 GRAS Transcription Factor family AT1G07530 46.939 5.94e-149 442.0
Cich4g00942 . 316 767 GRAS Transcription Factor family AT1G07530 51.435 1.43e-160 473.0
Cich4g01399 . 235 584 GRAS Transcription Factor family AT5G66770 25.278 2.73e-21 95.5
Cich4g01401 . 113 515 GRAS Transcription Factor family AT5G17490 23.46 2.57e-20 91.3
Cich4g01402 . 96 515 GRAS Transcription Factor family AT5G17490 23.908 5.45e-19 87.4
Cich4g01404 . 231 515 GRAS Transcription Factor family AT5G17490 27.243 1.73e-18 86.3
Cich4g01893 . 197 542 GRAS Transcription Factor family AT3G50650 23.901 3.49e-14 72.8
Cich4g04315 . 43 490 GRAS Transcription Factor family AT5G48150 62.031 0.0 560.0
Cich4g04725 . 69 489 GRAS Transcription Factor family AT5G48150 59.382 0.0 510.0
Cich4g04851 . 141 506 GRAS Transcription Factor family AT1G66350 35.584 1.43e-62 211.0
Cich4g04911 . 41 444 GRAS Transcription Factor family AT1G55580 49.02 2.91e-119 353.0
Cich4g04980 . 155 597 GRAS Transcription Factor family AT1G50600 64.574 0.0 580.0
Cich3g00174 . 14 405 GRAS Transcription Factor family AT5G41920 64.964 0.0 518.0
Cich3g00318 . 26 582 GRAS Transcription Factor family AT2G01570 63.652 0.0 703.0
Cich3g01909 . 1 525 GRAS Transcription Factor family AT4G17230 53.597 0.0 550.0
Cich3g02110 . 1 409 GRAS Transcription Factor family AT3G49950 43.868 3.44e-119 352.0
Cich3g02498 . 352 530 GRAS Transcription Factor family AT1G14920 57.542 1.28e-65 206.0
Cich3g02501 . 167 529 GRAS Transcription Factor family AT1G14920 33.943 3.90e-66 222.0
Cich3g02947 ACH 9 510 GRAS Transcription Factor family AT3G13840 48.767 3.93e-160 464.0
Cich3g04149 . 172 544 GRAS Transcription Factor family AT3G03450 36.132 1.78e-63 213.0
Cich3g04621 ACH 37 484 GRAS Transcription Factor family AT4G36710 51.31 1.13e-137 404.0
Cich3g04922 ACH 207 260 GRAS Transcription Factor family AT4G37650 55.556 4.78e-13 69.7
Cich3g05038 . 24 478 GRAS Transcription Factor family AT1G50420 38.21 3.10e-106 321.0
Cich3g05386 . 117 507 GRAS Transcription Factor family AT1G66350 41.093 2.73e-99 311.0
Cich2g00032 . 232 714 GRAS Transcription Factor family AT2G37650 50.503 1.05e-164 485.0
Cich2g00212 . 35 640 GRAS Transcription Factor family AT5G52510 46.845 3.72e-146 436.0
Cich2g01133 . 26 582 GRAS Transcription Factor family AT2G01570 62.842 0.0 696.0
Cich2g03634 . 157 516 GRAS Transcription Factor family AT5G17490 25.401 3.31e-24 103.0
Cich2g04774 . 69 339 GRAS Transcription Factor family AT2G29060 28.261 1.16e-12 65.1
Cich1g00160 . 276 650 GRAS Transcription Factor family AT3G54220 55.026 1.32e-142 422.0
Cich1g00840 . 242 651 GRAS Transcription Factor family AT3G54220 80.964 0.0 662.0
Cich1g00893 . 94 712 GRAS Transcription Factor family AT2G37650 51.84 0.0 636.0
Cich1g01706 . 178 546 GRAS Transcription Factor family AT3G03450 30.89 1.79e-57 199.0
Cich1g01749 . 41 490 GRAS Transcription Factor family AT5G48150 61.171 0.0 558.0
Cich1g02167 ACH 1 480 GRAS Transcription Factor family AT3G13840 45.842 8.99e-136 400.0
Cich1g02559 . 27 529 GRAS Transcription Factor family AT1G14920 49.119 1.07e-164 476.0
Cich1g03148 . 4 482 GRAS Transcription Factor family AT1G50420 56.458 0.0 536.0
Cich1g04521 . 211 582 GRAS Transcription Factor family AT2G01570 26.546 4.22e-49 176.0
Cich1g04523 . 258 546 GRAS Transcription Factor family AT3G03450 30.345 6.36e-47 164.0
Cich1g04525 . 172 547 GRAS Transcription Factor family AT3G03450 29.923 7.86e-56 194.0
Cich1g04529 . 172 547 GRAS Transcription Factor family AT3G03450 27.436 3.02e-49 176.0
Cich1g04530 . 147 547 GRAS Transcription Factor family AT3G03450 27.594 4.47e-51 181.0
Cich1g04639 . 205 555 GRAS Transcription Factor family AT4G00150 49.589 1.94e-107 332.0
Cich1g04795 . 22 654 GRAS Transcription Factor family AT1G63100 50.601 0.0 556.0
Cich1g04904 . 275 406 GRAS Transcription Factor family AT1G55580 50.0 8.55e-42 141.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cich GRAS 1.6e-128 CL0063 TF GRAS