AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04728 ATGGCTAGCATAAAACTTGAAGTTGTATCAGAAGATCAATCTCTACGTAAATGGTGTGTTCCTTTGAGGGAAGACGTATTTGCTACATTTATGTCAAAAGGAGGTTCAATCGTGCATAAGGTTTTTGGTGATAAATCGTTGTTTGGACCATTATTGTTTACAAAATTCTTTGATCCATCGGATGCGTTTCCTCTATGGGAATTTGAACCGGGTGTGGTGTTGTCTAATCTTCAGAACCCTTGTTTGGATTGGCTTCAAACAAACTCATGTTATATTCTTAAATCCGAACTACCAAAATTAGAAAAAAGCAATGTTCGAATTTGTGTCGAGAATGGAAAGGTTTTGGAGATAAGTGGGCTATGGAAGCATAAAGGAGAATCAAGAACAGACTGGAGGAGTGGCGAATGGTGGGAACATGGATTTGTACGGCGGTTAGAGTTGCCGGAAAACACAGACTGGAAGAAGATGGAGGCGTATGTGTTCAACGATACAGTTTTGGACATAAGACTTCCGAAGACGCAATTGGAGTGTGATAATGGGGTGATGAAAGAATCTGCATCTGGTAGTCCGTGA 573 40.49 MASIKLEVVSEDQSLRKWCVPLREDVFATFMSKGGSIVHKVFGDKSLFGPLLFTKFFDPSDAFPLWEFEPGVVLSNLQNPCLDWLQTNSCYILKSELPKLEKSNVRICVENGKVLEISGLWKHKGESRTDWRSGEWWEHGFVRRLELPENTDWKKMEAYVFNDTVLDIRLPKTQLECDNGVMKESASGSP 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04728 190 Gene3D - 51 179 IPR008978 -
Cich4g04728 190 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 72 187 IPR002068 -
Cich4g04728 190 SUPERFAMILY HSP20-like chaperones 56 174 IPR008978 -
Cich4g04728 190 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 3 179 - -
Cich4g04728 190 Pfam Hsp20-alpha crystallin family 83 176 IPR002068 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04728 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1651130 Cich Cich4g04728 Cich-Chr4:135723172 Cich6g00664 Cich-Chr6:9356868