AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04738 ATGGAGTCGATAATTGCGAGGGCGCTGGAGTATACTCTTAAGTACTGGCTTAAATCTTTCACCAGAGATCAGTTCAAGTTACAAGGACGGACTGTTCAGCTCTCCAATTTAGATATAAACGGTGATGCGTTGCACGCAAGTCTTGGATTGCCTCCGGCTTTGAATGTTACAACCGCGAAAGTCGGGAAGCTAGAAATTATACTTCCTTATTTGAGCAATGTACAAGTTGATCCTATTGTTGTGCAAATCGATAAGCTCGATTTGGTATTGGAAGAAAATGATGATTTGGATGCATATAAGAGCACAGACAGTGCACAAGCGCCATCCAGTCCTGCAAAAGGTAGCGGTTATGGATTCGCAGACAAGATTGCAGATGGGATGACATTAGAAGTAAGGACTGTCAATCTTTTACTTGAGACTCATGGTGGTGCTAGACGTCGTGGAGGGGCAACTTGGGCATCACCAATGGCATCTATTACTATACGCAACCTCTTGCTCTATACCACTAATGAGAACTGGCAGGCTGTAAATCTTAAAGAAGCCAGGGACTTTTCATATGACAAGAAGTTCATCTACGTGTTCAAAAAGCTTGAATGGGAGCATCTATCAATCGACCTCTTGCCTCACCCTGATATGTTTGCAGCATTTTCTGAAGGTGCATTTAAGGATGATGATGGTGCAAAGCGAGTTTTTTTTGGTGGTGAGCGGTTTCTTGAAGGAATTTCAGGAGAAGCTTATATTACAATACAAAGAACAGAGCTTAACAGTCCACTAGGGTTAGAACTTCAAGTGCATATTAATGAAGCCGTGTGTCCAGCTTTAAGTGAACCAGGCTTACGAGCTCTTCTTCGATTCTTTACGGGATTGTATGTATGTTTAAATAGGGGAGACATGAATCCAAATGCTCAAGAGCGATCTGCTGAAGCTGCAGGGCGTACACTAGTTTCCATTATGGTGGACCATATATTTTTTTGCATCAAAGATACTGACTTCCAGTTAGACCTTTTAATGCAGTCACTTCTCTTTTCTCGGGCAAGCCTTTCTGATGGAGAAATCACCAAATGCTTAACTCGGGTCATGATAGGTGGACTATTTCTGCGGGACACTTCCTCTCGCCCACCATGCGCATTAGTACAACCATCAATGCAGAATGCCGCAGAGGAACAACTACACATTCCAGATTTTGGAAAGAATTTCTGTCCTCCAATATATCCATTAGGTGACCACCAATGGAAATTAAGTGACCGTGCTCCACTAATATCCCTCCATTGTCTTCAATTTCTGCCCTCACCTACCCCACCATCATTCTCTACACAAACCGTCATCGACTGCCAGCCTCTTATGATACATCTACAAGAGGAATCTTGTCTAAGAATCTCGTCTTTACTAGCAGACGGAATCATGGCTAATTCCGGTGACATTTTACCGGATTTTTCAATCAACTCCCTTGAATTAAACATCAAAGGAATAGACATCACAATTCCACTCGATAATCAAAAATCCAAGTACCCTTCATTTGATAACTCCTTTACTGGAGCAAAACTTCATATTGAAAACTTATTTTTTCACGAGTCACCTTCCTTGCGACTCAAGCTACTCAACCTCGAAAAAGACGCCGCTTGTTTCTGTCTATGGAAAGGACAACCAATCGATGCTAGCCAGAAAAAATGGACAGGTGGCGCTTCTGTCCTTAATCTGTCTCTTGAAACATGTATTAAGAACGGAATCAACAATTCCGGTTTCCAATCTTCGGAATTGAGGTGTGTAGAAGTGAAAGACGCGTGCATTCAAGTAGCAATGGTAACAGCGGACGGGGCACCTTTAACCGATGTCCCACCGCCAGGTGGCATTGTTAGAGTAGGAATTGCGTGTGAACAATATCAGTCAAACACTTCCGTTGACCAACTGTTTTTCGTATTGGATCTATATGCGTATTTCGGTATAGTCAGTGAGAAGATGGCCATGGTTGGAAAAAGTAAAAGAAAAAAAGCGGTGAAAATTGACGGAAATTTAATCGAAAAAGTTCCCGGTGATACCGCGGTTAGTTTAGCAGTTAAAAACCTACAGCTAACCTTTCTAGAGTCTTCCATTCAAGAAATAATGCCCTTAGTTCAATTTTTCGGGGAAGATCTTTTCATGGAAGTTACACATAGAACCCTCGGTGGTGCAATGGCAATTTCGTCAATTTTAAGGTGGGACAAAGTCCAGGTGGACTGTGCTGAAACCGAAAATGGTAACGAAATTTGTCTCCCTAAATTGAGACCTGTATTTTGGGTGCAAAAAGGAAGGAATCGTGACCCGTTTTTGAATTTACGAATGGTGCATGTTATTCCATATAATTCAAAGGATGCAGAGTGTCATAGTGTAAGTTTGTCAGCTTGTGTCGCGGGTGTACGTTTAGCAGGTGGGATGAACTACACCGAATCGCTACTCCACCGGTTTGGGATTTTAGGACCGGATGGTGGACCCGGGGTTGGGCTTACTAAAGGTTTGGACCGTTTATCCGCGGGCCCGTTTTCAAAGCTTTTCAAACCGTCAACTCATAAAAGCATAGACGAGAAGGATAGTGGTTACTTGCAGTTGGGTGCGCCTGATGACGTGGACGTATCGTTGGAATTGAAGGACTGGTTATTTGCGTTGGAAGGTGCTGACGTGGCGGAAAGATTGTTTTTTAATAGAGAAGAGAGATCATGGCACACGACTTTTGAGAGTTTTAAAGTTAAAGCAAACAGCAGGAAGAGTACCTCGGTGAATGGGAAGAAGAATTCAAAGCATCCTGTTGAGTCGGTGACGGTTGGTGTTGAAGGGTTGAAGACATTAAAACCCCAGCAACATAAGGGAGATGTACAAACAAATGGGCACAAGGAAACTGCTGAGTCATCACACGGTGGGGTGGATCTTGAAGCTGACATCGTGTTATCTGAAGACGATGGTGTTAATGAAGTAATTAAGTGGGTAGTGGAAAGTTTAAAATTTTGTGTGAAACATCCGGTCGAGGCAATTGTAACTAAAGATGAGCTGTCACATGTTGCTAAACTATGCAAGTCAGAAGTTGATTCCATGGGGCGAATAACTGCTGGGGTTTTGCGTGTTTTGAAGTTAGAAGGATCAATTGGTGAAACAGCAATGGATCAACTAAGCAACCTTGGAAGTGAAGGGTTTGACAAGATTTTCTCACCAGGGAACCATAGTAATGGTTCTTCCTTAGTGGCTTCAGATAACCAACATTCTTCTTCATCTTTCAATTCAATATTAACTTCACTTGAGGCGACATTATTGGATACACAGACCAATTGTGCAGCTCTTACTGCTAACTTGAGCGGTTCTGAATCTATGAATCCACACCTTCATAGTGTACAAGAACTTGCACAGAAACTAGAGAGCATGCAGAAATTATTGGCCAAGTTGCAGACTCAACTCTAA 3423 42.51 MESIIARALEYTLKYWLKSFTRDQFKLQGRTVQLSNLDINGDALHASLGLPPALNVTTAKVGKLEIILPYLSNVQVDPIVVQIDKLDLVLEENDDLDAYKSTDSAQAPSSPAKGSGYGFADKIADGMTLEVRTVNLLLETHGGARRRGGATWASPMASITIRNLLLYTTNENWQAVNLKEARDFSYDKKFIYVFKKLEWEHLSIDLLPHPDMFAAFSEGAFKDDDGAKRVFFGGERFLEGISGEAYITIQRTELNSPLGLELQVHINEAVCPALSEPGLRALLRFFTGLYVCLNRGDMNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFQLDLLMQSLLFSRASLSDGEITKCLTRVMIGGLFLRDTSSRPPCALVQPSMQNAAEEQLHIPDFGKNFCPPIYPLGDHQWKLSDRAPLISLHCLQFLPSPTPPSFSTQTVIDCQPLMIHLQEESCLRISSLLADGIMANSGDILPDFSINSLELNIKGIDITIPLDNQKSKYPSFDNSFTGAKLHIENLFFHESPSLRLKLLNLEKDAACFCLWKGQPIDASQKKWTGGASVLNLSLETCIKNGINNSGFQSSELRCVEVKDACIQVAMVTADGAPLTDVPPPGGIVRVGIACEQYQSNTSVDQLFFVLDLYAYFGIVSEKMAMVGKSKRKKAVKIDGNLIEKVPGDTAVSLAVKNLQLTFLESSIQEIMPLVQFFGEDLFMEVTHRTLGGAMAISSILRWDKVQVDCAETENGNEICLPKLRPVFWVQKGRNRDPFLNLRMVHVIPYNSKDAECHSVSLSACVAGVRLAGGMNYTESLLHRFGILGPDGGPGVGLTKGLDRLSAGPFSKLFKPSTHKSIDEKDSGYLQLGAPDDVDVSLELKDWLFALEGADVAERLFFNREERSWHTTFESFKVKANSRKSTSVNGKKNSKHPVESVTVGVEGLKTLKPQQHKGDVQTNGHKETAESSHGGVDLEADIVLSEDDGVNEVIKWVVESLKFCVKHPVEAIVTKDELSHVAKLCKSEVDSMGRITAGVLRVLKLEGSIGETAMDQLSNLGSEGFDKIFSPGNHSNGSSLVASDNQHSSSSFNSILTSLEATLLDTQTNCAALTANLSGSESMNPHLHSVQELAQKLESMQKLLAKLQTQL 1140
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04738 1140 PANTHER UNCHARACTERIZED 1 744 IPR026728 -
Cich4g04738 1140 MobiDBLite consensus disorder prediction 943 962 - -
Cich4g04738 1140 Pfam VPS13-like, N-terminal 1 102 IPR026854 -
Cich4g04738 1140 Coils Coil 1119 1139 - -
Cich4g04738 1140 MobiDBLite consensus disorder prediction 948 962 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04738 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
63060 Cich4g04738 Cich9g00120
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1666158 Cich Cich1g01744 Cich-Chr1:34686116 Cich4g04738 Cich-Chr4:135874064
1674439 Cich Cich9g00120 Cich-Chr9:3235920 Cich4g04738 Cich-Chr4:135874064
1674948 Cich Cich9g02202 Cich-Chr9:54818003 Cich4g04738 Cich-Chr4:135874064
1681016 Cich Cich4g04738 Cich-Chr4:135874064 Cich9g00119 Cich-Chr9:3225897