AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04807 ATGAGGGTTCACATCACTCGTAATTTAAATTTAGCGTTGGATTACCGTCGTTTCGTCGCTTGTTCATTTGCATCCACTTTATCACTCCGGGCGGCGTCGGCGGATTGTTTTCTAGTAAATCTTCCTAGGAAGAATTACCTGTCTGCTTTAGGTAGGTTTAATTTGTCGACTGTTGCTTCGGTGCGAGATTCTTCTTGTGTGAAGACCATGGGTTCGCAAGCAGCGGCGGAGGTAGAGTGGCCGGCCAACAAAGTTAGAGATACTTTTATAAAGTTTTTTGAAGAAAGGAATCACGTTTACTGGAAATCAAGTCCCGTCGTTCCTGTCAATGATCCCACCCTTCTCTTTGCCAATGCTGGAATGAATCAGTACAAGCCTATCTTCTTGGGTACTGCCGATCCTAACACAGCATTGAGCAAACTGACTCGTGCATGCAACACCCAAAAGTGTATCCGAGCTGGTGGGAAGCATAATGATCTCGATGATGTTGGCAAAGACACTTATCATCATACCTTCTTTGAGATGCTTGGTAACTGGTCATTTGGAGATTATTTCAAAGAAGAAGCCATTGGATGGGCCTGGGAGCTTCTCACAACGGTGTTTAAGCTACCTACTGATCGAATCTATGCTACTTATTTTGGTGGTGATGAGAAACTTGGCCTTCCTGCTGATAATGAAGCTAGAGAAATCTGGCACAAATATCTGCCACCTGCAAGAGTTTTGCCTTTTGGTTGTAAAGACAATTTTTGGGAGATGGGAGATACTGGACCTTGTGGGCCCTGTACTGAAATACACTTTGATAGAATTGGTGGTCGTGATGCTGCAGATTTGGTTAACAATGATGACCCTACCTTGATTGAAATATGGAATAATGTGTTTATTCAGTTTAACAGGGAAGCTGATGGATCCTTGAAACCTCTACCTGCCAAACACGTGGATACTGGAATGGGATTTGAAAGATTGACTTCAATTCTTCAGAACAAGCTTAGCAACTATGATACTGATGTCTTTATACCTATTTTTGATGCTATCCAACAGTCAACTGGTGCTAGACCATATTCGGGCAAAGTGGGCCCCGATGACAAGGATGGAATTGACATGGCGTACAGAGTTGTTGCTGATCACATTAGAACTCTTTCATTTGCCATTGCAGACGGTTCTTGTCCAGGCAATGAAGGGCGTGAATATGTTTTGCGCCGTATTCTTCGCCGAGCTGTTCGCTATGGAACAGAAGTATTGAAAGCACAGCAAGGATTTTTCAATGGATTGGTAAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCTGAACTAAAGCAACAAGAGGCCCATATTAGAGAGATTATAGCAGAAGAGGAAGCAAGTTTTGGGAGGACATTACTCCATGGAATTGAGAAGTTTAAGAAGACTGCTCAAGATGTTCAGGGAAAGATATTTAGTGGACAGGATGCATTTGTGTTGTGGGACACTTTTGGATTTCCATTGGATTTGACTCAGTTAATGGCAGAAGAAAGAGGGCTGACAGTTGATGTCGATGGTTTCAATATTGCCATGAATGAAGCTAGAGAAAGATCAAGAAACGCCCAGAATAAGCAAGCTGCTGTTACGATTGTCATGGATGCAGATGCCACATCAGCACTGCATAAGAAAGGGATTGCTACAACAAATGATAGTTTCAAGTTTACATGGTTTAAGGACCATAAGACTGTGATAAAAGCCATTTACACGGGTAGTGAGTATGTGGAACGTGCTTCTGTTGGTGATGATGTTGGTATAATTCTTGAGAGCACAAGTTTTTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGGAGGCCAATCTGGAACATTTGAAGTTGTAAATGTTCAAGTTTATGGTGGTTACGTAATTCATCTTGGTAAAATTAATGGGGAATCTGGCAAATTTAATGTTGGCGATGAAGTAATTTGTAAGGTTGACTATGAAAGGCGTCAGCGCATTGCTCCTAACCATACGTGTACCCACATGTTGAATTTTGCCCTCAGGGAAGTACTTGGAACTCATGTTGACCAGAAAGGATCTATTGTTCTTCCAGAAAAATTAAGATTTGACTTTTCTCATGGAAAGCCTGTAAAGCCAGAAGACCTTCGCAAAATCGAATCAATTGTGAATGAACAAATTAAATCGGAACTAGAAGTTTCTGCAAAAGAGGCAAGCCTTGCTGATGCAAAACGTGTGAATGGATTACGTGCTGTTTTTGGTGAAGTGTACCCTGACCCTGTCAGAATTGTTGCTATTGGTCGAAAAGTTGATGAACTCTTGGCTAACCCTGAAAGTGAAGAGTGGCAGTCCATTTCCGCAGAGCTTTGTGGAGGGACACATATTTCAAATACACGAGAGGCCAAGGCATTTGCACTTTTGTCAGAGGAGGGAATTGCCAAGGGGATTAGGCGCGTTACTGCTGTTACAACAGATTATGCTTTTGAGGCTATTAAAAAGGCAGCTGAACTTGAAGAGGAAGTCAACCAGGCATCCAAGCTTGAAGGAAGTCTTCTTGAACAGAAAGTGACCTCTTTAAATGGTCAAGTAGAGTCTGCAGCTATTTCATCAGCAAAGAAGGCTGATCTCAAGGCTAAAATATCCATCCTTCAGAATCAAGTGATAAAGAATAAAAAGAAAGTTGCTGAGGAAAACATACGCAAAGCTGTTGAAACTGCCACCAAAGCAGCAGATGCGGCTTTATCGGAGGGAAAGGCTTTCTGCATTTCACATGTTGATGTGGGGTCCGACACTGCTGCAATTCGTGAAGCAGTTGTAAAAGTCATGGAGCAGAAGGGAATGGCGGTGATGGTTTTTAGCACCGATGAACAATCTAAGAAGGCTTTAGTGTGTGCCGGTGTACCGGAAAAAAGCGATAAAGCTAACCAGTTGAAGGTTTTGGAGTGGCTGAAGGCGGCATTGAAGCCGCTAGAAGGTAAAGGTGGTGGAGGGAAAGGAGGTCTTGCTCAAGGACAGGGACCCGATATAAAGCATGTAGATGAAGCAATAGACGTTGCCAAGTCATTTGCAGCACTCAAACTCGGCTGA 3075 42.76 MRVHITRNLNLALDYRRFVACSFASTLSLRAASADCFLVNLPRKNYLSALGRFNLSTVASVRDSSCVKTMGSQAAAEVEWPANKVRDTFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTTVFKLPTDRIYATYFGGDEKLGLPADNEAREIWHKYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKLSNYDTDVFIPIFDAIQQSTGARPYSGKVGPDDKDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKQQEAHIREIIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGQDAFVLWDTFGFPLDLTQLMAEERGLTVDVDGFNIAMNEARERSRNAQNKQAAVTIVMDADATSALHKKGIATTNDSFKFTWFKDHKTVIKAIYTGSEYVERASVGDDVGIILESTSFYAEQGGQIFDTGLLGGQSGTFEVVNVQVYGGYVIHLGKINGESGKFNVGDEVICKVDYERRQRIAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRFDFSHGKPVKPEDLRKIESIVNEQIKSELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRKVDELLANPESEEWQSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKAAELEEEVNQASKLEGSLLEQKVTSLNGQVESAAISSAKKADLKAKISILQNQVIKNKKKVAEENIRKAVETATKAADAALSEGKAFCISHVDVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPEKSDKANQLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 1024
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04807 1024 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 80 829 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Cich4g04807 1024 SUPERFAMILY Translation proteins 586 655 IPR009000 -
Cich4g04807 1024 FunFam Alanine--tRNA ligase, cytoplasmic 656 831 - -
Cich4g04807 1024 Pfam DHHA1 domain 872 1018 IPR003156 GO:0003676(InterPro)
Cich4g04807 1024 Gene3D - 912 1019 - -
Cich4g04807 1024 FunFam Alanine--tRNA ligase, cytoplasmic 79 329 - -
Cich4g04807 1024 Pfam tRNA synthetases class II (A) 84 659 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Cich4g04807 1024 Coils Coil 823 850 - -
Cich4g04807 1024 Gene3D - 656 833 - -
Cich4g04807 1024 SUPERFAMILY Class II aaRS and biotin synthetases 81 332 IPR045864 -
Cich4g04807 1024 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 333 533 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Cich4g04807 1024 Coils Coil 511 531 - -
Cich4g04807 1024 FunFam Alanine--tRNA ligase 554 654 - -
Cich4g04807 1024 Gene3D - 550 655 - -
Cich4g04807 1024 NCBIfam alanine--tRNA ligase 84 1002 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cich4g04807 1024 FunFam Alanine--tRNA ligase 911 1019 - -
Cich4g04807 1024 Hamap Alanine--tRNA ligase [alaS]. 80 1023 IPR023033 GO:0004813(InterPro)
Cich4g04807 1024 CDD AlaRS-core 82 328 - -
Cich4g04807 1024 PRINTS Alanyl-tRNA synthetase signature 370 386 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cich4g04807 1024 PRINTS Alanyl-tRNA synthetase signature 394 407 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cich4g04807 1024 PRINTS Alanyl-tRNA synthetase signature 158 169 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cich4g04807 1024 PRINTS Alanyl-tRNA synthetase signature 313 326 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cich4g04807 1024 PRINTS Alanyl-tRNA synthetase signature 286 297 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cich4g04807 1024 SUPERFAMILY ThrRS-AlaRS common domain 655 827 IPR018163 GO:0000166(InterPro)
Cich4g04807 1024 PANTHER ALANYL-TRNA SYNTHETASE 77 1020 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Cich4g04807 1024 Coils Coil 881 901 - -
Cich4g04807 1024 SMART tRNA-SAD-4 757 816 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cich4g04807 1024 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 757 815 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cich4g04807 1024 Gene3D Bira Bifunctional Protein; Domain 2 81 329 IPR045864 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04807 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1642529 Cich Cich2g03068 Cich-Chr2:118528605 Cich4g04807 Cich-Chr4:136605609
1650134 Cich Cich4g03264 Cich-Chr4:95074704 Cich4g04807 Cich-Chr4:136605609