AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04832 ATGTCGTTTCCGATTTTTGATTATAATATATACCTATCAAATGGGATTAATCTTAAGGCAAAAGAGGACGATTCACCGGCTCCTGTTGAGGTGAATAACAATATTATTCCATCAGCAACCGTGCTCAAGCAATTAGCCATAGGTTTTCAGACAACAAAAGTTATAAGGTCGATGAAGGATCTTTTGGTATCATCAAGAGATTCATTACCTGTGAAGGAGAGATCTGGTTTGAGCTTATCCGCTATGAAGTCATTCGTAGTGGGGGAGAGAGAAGAAGATAAGTTTATTTCTGAGTTCGGTCGTAATGAAAAAGTAATGTCTTTTATCTATTCACTGCTCGATGCGGAAGGAAATTTTTCTCGAAAGAAATTTGGATCTTCTCTTGGGACGAATAAAAACGTTACTAACTTTTGCAAAGAAATTCATGGTGCTCCTCCCGACAGCATTGTTACAGAGCTCGCTGAAGCTATTGGAAGTTTGAAAACTTTGAGGAAAATGGCATTGTTTTGGTCCACGGTTGTTGGAGAATTGAGAAGGCTATGGTGTGAGGGACAATATATTCCGGGAATCCCTCGAGATAAAATTCCAAACTTAAATTCGTGTCTATTGTATCAGCATTTTCAGGTTATCAATTGCTGTATTTCTAGGAAACAACGGCGTGCTATTGCCACCAAATCATTAGATGCGGTTCTAAAACAAGCCAATCACGATGCGGATCTTTATGCTAAAATCAGTACCGGGGAACGTGTGCTTCGATTAGGAGCTAACAAACGACTTGAGAACACAACGCTTTTGAAAACCGGTGAACCTGTATTCACGCCCGTTATGCAGGAAGGGCCGTTGCTTACAGAAGACGTTATTAAGGAAACGGAGGAACTTGTGCTACGTACTGGGAGTGTTGGTGCGGGGTGTTCTCAGCTTCTCTCTGATATGCAGGCTTTCAAGGCTGCAAATCCAGGTTGCATATTAGAAGATTTTGTTAGATGGCACTCACCCCCTGACTGGACAGAAACATCGACAGATGATCAAAAAAAAGAATCCGTTATTGGTGGTCTATCTTCTTCTAAAGGACAGCTGAGTTCCCGTATGCAAAAAGAAGGTAATTTATGGCGAGAACTTTGGGAATTTGCAAGACCGTTACCTGCTGTTAAACAGTCTCCATTATACGATGAGGATTTATCAGTGGAAGGTATTTTGCATGGCTTTGAGAACATATCACCTTCTGGTTTCTTTGAGCAGCTGTTTCTTTCTCTTCTTAGTCTGGGATGTACGATTGCCGAGGCCAGAATTTCAAGTAACAAAGATCTATACAAGCTTTTCAAGGAGTGCAAAGAGTACATTGTTATTACTTGTCAAGGCAAAAATTGGGTCGAGAAAGCCGATGATATATGCCAGGTTTATGGGACCGTGGCAATGATGGCATTGTGCCCCAATGGTGTCATAAGGATAACGCCTGATGAGACTCGTGAAAACAATGAACCCAAGGGCAGTTTTGGGAAATTTGGCATCATGTATGGTGGTATGGATAATAGCATGTGGAAAACATCGCGAAATGACCAAAAGAACCAAGAACTCAACACAACAACACAATCGTCTACAACGTTTTCAAAAAAGCCACCAAAACCTCTTGAGAAACAACTTGGTTCTATCGAAATGAAACCTCAATGA 1668 41.01 MSFPIFDYNIYLSNGINLKAKEDDSPAPVEVNNNIIPSATVLKQLAIGFQTTKVIRSMKDLLVSSRDSLPVKERSGLSLSAMKSFVVGEREEDKFISEFGRNEKVMSFIYSLLDAEGNFSRKKFGSSLGTNKNVTNFCKEIHGAPPDSIVTELAEAIGSLKTLRKMALFWSTVVGELRRLWCEGQYIPGIPRDKIPNLNSCLLYQHFQVINCCISRKQRRAIATKSLDAVLKQANHDADLYAKISTGERVLRLGANKRLENTTLLKTGEPVFTPVMQEGPLLTEDVIKETEELVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTETSTDDQKKESVIGGLSSSKGQLSSRMQKEGNLWRELWEFARPLPAVKQSPLYDEDLSVEGILHGFENISPSGFFEQLFLSLLSLGCTIAEARISSNKDLYKLFKECKEYIVITCQGKNWVEKADDICQVYGTVAMMALCPNGVIRITPDETRENNEPKGSFGKFGIMYGGMDNSMWKTSRNDQKNQELNTTTQSSTTFSKKPPKPLEKQLGSIEMKPQ 555
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04832 555 Pfam Rab3 GTPase-activating protein catalytic subunit 252 403 IPR026147 -
Cich4g04832 555 MobiDBLite consensus disorder prediction 511 539 - -
Cich4g04832 555 MobiDBLite consensus disorder prediction 511 555 - -
Cich4g04832 555 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 29 534 IPR045700 GO:0005096(InterPro)|GO:0005096(PANTHER)|GO:0043547(PANTHER)|GO:0043547(InterPro)
Cich4g04832 555 MobiDBLite consensus disorder prediction 345 360 - -
Cich4g04832 555 MobiDBLite consensus disorder prediction 334 360 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04832 K18270 Rab3 GTPase-activating protein catalytic subunit
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Event-related genes

Select Gene_1 Gene_2 Event_name
63072 Cich4g04832 Cich9g00084
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:136987015 Cich9g00084 Cich-Chr9:2611079 dispersed