AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cich4g04846 | ATGATGATGACGATGTTTGCGCGCACAATCCATCGCAGCAGCAGCAGGATCAATGTTCACCATTCTTCACTCTCACTCTCACACTCATTACGTTGCAACAGCCACTCCCCGTCGAATATTCTCCATTGCCAGATGAGCACGGAAACAGCTAGTATCATAGATCGGCTCAAGAGCTCTGGATTATTGCGAACCAAAGGTCTAATCGGAGGAAAATGGACTGATGCTTATGATGGGAGGACGATAGAGGTTAACAACCCTGCTAGTGGTGATGTTATAGCTTCTGTTGCATGTATGGGCGAAAGGGAAACAAAGGATGCGATCTCTTCAGCCTATGATGCTTTTAGCCATTGGAGCAAGCTTACTGCTAATGACAGGAGCAGTCGCCTACGTAATTGGTATAACTTATTACTTCAACATAAAGAAGAACTCGGACAACTTATAACTTTAGAGCAAGGAAAGCCTCTAAAAGAAGCCATTGGAGAAGTTGGATATGGAGCTAGTTTCATTGAGTTCTTTGCAGAAGAGGCAAAACGTATTTATGGTGATATAATTCCACCAACACTCTCTGATCGCCGTCTATTTGTTCTAAAACAGCCTGTTGGTGTGGTTGCTGCAATTACACCATGGAATTTTCCTTTAGCAATGATTACCAGGAAGGTGGGGCCCGCTCTTGCCTGTGGGTGTACAGTTGTCATAAAGCCATCTGAGCTTACACCGTTGACTGCTTTAGCAGCAGCTGAGCTGGCACTTCAATCTGGAATCCCACCGGGTGTCTTGAATGTAGTTATGGGAGATGCTCCTAAAATTGGCAATACGTTAGTTGAAAGCCCGCAGGTGAGAAAGATAACATTCACTGGTTCAACAGCTGTTGGAAAGAAACTAATGGCTGGTGCAGCTGAAACTGTCAAAAAGGTTTCTCTTGAACTTGGTGGTAATGCACCTTGCATAGTCTTTGATGATGCTGACCTGGAAGTGGCAATAAAAGGGAGTTTGGCAACAAAATTCCGTAACAGTGGACAAACATGTGTATGTGCAAATAGAATACTTGTGCAAGAAGGAATATATGAGAAATTTACAAAAGCCTTCTCAAATGCTGTTCAAAACCTTAAAGTTGGCAATGGTCTTACTGAAGGTGTAGCCCAGGGACCACTAATTAACGAGGCTGCTGTACAAAAGGTTGAATCATTTGTGCAAGATGCTGTCTCAAAGGGAGCAAAAGTTTTACTAGGTGGTAAAAGGCATAGCCTTGGGATGTCCTTTTATGAGCCTACTGTTATAGGTGATGTCAAGAACGAGATGCTCATAGCAAGGCAGGAAGTATTTGGACCTGTTGCACCTGTTTTACGGTTTAAAACAGAAGAAGAAGCTATACAGATTGCAAATGACACTAACGCAGGATTAGCTGCTTATATATTCACAAACAGTATTAAGCGATCATGGCGTGTGTCTGAAGCTCTTGAATATGGTATTGTTGGAGTTAATGAAGGATTGGTTTCCACAGAGGTGGCTCCTTTTGGAGGTTATAAACAATCGGGTCTTGGACGTGAAGGTTCCAAATATGGAATGGATGACTATCTTGAAATCAAGTACATATGTATGGGAAACATGGGCTGA | 1614 | 42.81 | MMMTMFARTIHRSSSRINVHHSSLSLSHSLRCNSHSPSNILHCQMSTETASIIDRLKSSGLLRTKGLIGGKWTDAYDGRTIEVNNPASGDVIASVACMGERETKDAISSAYDAFSHWSKLTANDRSSRLRNWYNLLLQHKEELGQLITLEQGKPLKEAIGEVGYGASFIEFFAEEAKRIYGDIIPPTLSDRRLFVLKQPVGVVAAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELALQSGIPPGVLNVVMGDAPKIGNTLVESPQVRKITFTGSTAVGKKLMAGAAETVKKVSLELGGNAPCIVFDDADLEVAIKGSLATKFRNSGQTCVCANRILVQEGIYEKFTKAFSNAVQNLKVGNGLTEGVAQGPLINEAAVQKVESFVQDAVSKGAKVLLGGKRHSLGMSFYEPTVIGDVKNEMLIARQEVFGPVAPVLRFKTEEEAIQIANDTNAGLAAYIFTNSIKRSWRVSEALEYGIVGVNEGLVSTEVAPFGGYKQSGLGREGSKYGMDDYLEIKYICMGNMG | 537 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cich4g04846 | 537 | FunFam | Aldehyde dehydrogenase, putative | 503 | 529 | - | - | |
| Cich4g04846 | 537 | CDD | ALDH-F5-SSADH-GabD | 83 | 533 | - | - | |
| Cich4g04846 | 537 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 307 | 314 | IPR029510 | GO:0016491(InterPro) | |
| Cich4g04846 | 537 | FunFam | Succinate-semialdehyde dehydrogenase I | 311 | 500 | - | - | |
| Cich4g04846 | 537 | NCBIfam | succinate-semialdehyde dehydrogenase | 83 | 529 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) | |
| Cich4g04846 | 537 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 56 | 536 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Cich4g04846 | 537 | Pfam | Aldehyde dehydrogenase family | 72 | 531 | IPR015590 | GO:0016491(InterPro) | |
| Cich4g04846 | 537 | SUPERFAMILY | ALDH-like | 61 | 535 | IPR016161 | GO:0016491(InterPro) | |
| Cich4g04846 | 537 | FunFam | Succinate-semialdehyde dehydrogenase I | 78 | 323 | - | - | |
| Cich4g04846 | 537 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 335 | 346 | IPR016160 | GO:0016491(InterPro) | |
| Cich4g04846 | 537 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 311 | 500 | IPR016163 | GO:0016620(InterPro) | |
| Cich4g04846 | 537 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 78 | 525 | IPR016162 | GO:0016491(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cich4g04846 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Cich4g04846 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cich | Cich-Chr1:29569552 | Cich4g04846 | Cich-Chr4:137195104 | dispersed | |
| Cich | Cich-Chr1:41131096 | Cich4g04846 | Cich-Chr4:137195104 | dispersed | |
| Cich | Cich-Chr4:137195104 | Cich6g01824 | Cich-Chr6:26295443 | dispersed | |
| Cich | Cich-Chr4:137195104 | Cich4g03807 | Cich-Chr4:112935071 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cich9g00992 | . | 7 | 482 | Aldehyde Dehydrogenase gene family | AT1G44170 | 67.437 | 0.0 | 676.0 | |
| Cich9g01667 | . | 400 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 43.299 | 4.83e-18 | 74.7 | |
| Cich9g01668 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 85.685 | 0.0 | 906.0 | |
| Cich9g01669 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 76.815 | 0.0 | 783.0 | |
| Cich9g01672 | . | 281 | 391 | Aldehyde Dehydrogenase gene family | AT2G24270 | 78.378 | 2.35e-53 | 181.0 | |
| Cich9g01917 | ACH | 234 | 316 | Aldehyde Dehydrogenase gene family | AT3G66658 | 36.145 | 2.79e-08 | 53.5 | |
| Cich8g00256 | . | 248 | 336 | Aldehyde Dehydrogenase gene family | AT3G48000 | 77.528 | 4.22e-40 | 145.0 | |
| Cich8g01957 | . | 73 | 209 | Aldehyde Dehydrogenase gene family | AT3G24503 | 62.774 | 7.72e-53 | 180.0 | |
| Cich8g02684 | . | 148 | 279 | Aldehyde Dehydrogenase gene family | AT3G48000 | 83.333 | 1.34e-77 | 238.0 | |
| Cich7g00171 | . | 207 | 242 | Aldehyde Dehydrogenase gene family | AT3G48170 | 69.444 | 1.71e-08 | 53.5 | |
| Cich7g01546 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 89.718 | 0.0 | 934.0 | |
| Cich7g03230 | . | 38 | 76 | Aldehyde Dehydrogenase gene family | AT1G74920 | 71.795 | 2.81e-13 | 60.8 | |
| Cich6g01495 | ACH | 1 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 55.694 | 0.0 | 577.0 | |
| Cich6g01824 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 74.721 | 0.0 | 869.0 | |
| Cich6g04123 | . | 211 | 247 | Aldehyde Dehydrogenase gene family | AT3G48000 | 78.378 | 4.03e-14 | 66.2 | |
| Cich6g04124 | . | 67 | 112 | Aldehyde Dehydrogenase gene family | AT3G48000 | 77.083 | 2.65e-17 | 72.4 | |
| Cich5g00224 | . | 8 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 78.871 | 0.0 | 932.0 | |
| Cich5g00865 | . | 72 | 247 | Aldehyde Dehydrogenase gene family | AT3G48000 | 45.455 | 5.46e-34 | 126.0 | |
| Cich5g03690 | . | 290 | 344 | Aldehyde Dehydrogenase gene family | AT2G14170 | 80.0 | 2.24e-25 | 100.0 | |
| Cich5g03691 | . | 392 | 489 | Aldehyde Dehydrogenase gene family | AT2G14170 | 67.347 | 2.74e-39 | 135.0 | |
| Cich5g04426 | . | 207 | 242 | Aldehyde Dehydrogenase gene family | AT3G48170 | 75.0 | 2.04e-11 | 60.1 | |
| Cich4g03807 | ACH | 75 | 606 | Aldehyde Dehydrogenase gene family | AT2G14170 | 82.397 | 0.0 | 913.0 | |
| Cich4g04846 | . | 1 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 73.881 | 0.0 | 812.0 | |
| Cich3g02334 | . | 1 | 501 | Aldehyde Dehydrogenase gene family | AT1G74920 | 79.641 | 0.0 | 862.0 | |
| Cich3g02370 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 79.113 | 0.0 | 908.0 | |
| Cich3g03373 | . | 25 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 78.759 | 0.0 | 909.0 | |
| Cich3g03439 | . | 341 | 411 | Aldehyde Dehydrogenase gene family | AT2G14170 | 81.69 | 6.53e-29 | 105.0 | |
| Cich3g03748 | . | 67 | 254 | Aldehyde Dehydrogenase gene family | AT1G23800 | 57.292 | 2.14e-64 | 215.0 | |
| Cich3g04014 | . | 218 | 316 | Aldehyde Dehydrogenase gene family | AT5G62530 | 75.758 | 2.45e-47 | 157.0 | |
| Cich3g04504 | . | 11 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 61.392 | 0.0 | 616.0 | |
| Cich3g04768 | . | 207 | 242 | Aldehyde Dehydrogenase gene family | AT3G48170 | 77.778 | 4.22e-11 | 61.2 | |
| Cich3g05212 | . | 171 | 254 | Aldehyde Dehydrogenase gene family | AT4G34240 | 62.921 | 2.06e-28 | 108.0 | |
| Cich2g03901 | . | 3 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.136 | 0.0 | 707.0 | |
| Cich2g04025 | . | 569 | 607 | Aldehyde Dehydrogenase gene family | AT2G14170 | 63.415 | 2.57e-09 | 57.8 | |
| Cich2g04872 | . | 358 | 457 | Aldehyde Dehydrogenase gene family | AT2G14170 | 71.287 | 5.92e-35 | 125.0 | |
| Cich1g00841 | . | 151 | 187 | Aldehyde Dehydrogenase gene family | AT1G79440 | 54.054 | 1.30e-06 | 45.8 | |
| Cich1g01431 | ACH | 84 | 607 | Aldehyde Dehydrogenase gene family | AT2G14170 | 67.614 | 0.0 | 747.0 | |
| Cich1g03356 | . | 67 | 244 | Aldehyde Dehydrogenase gene family | AT1G23800 | 69.101 | 4.53e-76 | 261.0 | |
| Cich1g03712 | . | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 53.75 | 0.0 | 555.0 | |
| Cich1g03715 | ACH | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 56.458 | 0.0 | 580.0 | |
| Cich1g04533 | . | 1 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 81.101 | 0.0 | 935.0 |