AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04849 ATGAACAAATTGGGCAGAGGGCACCGTGACAAGGTTCAACAGTTCATGACAATTACTGGAGCTAGTGAAAAAGTTGCTCTTCAAGCCTTGAAGGCAAGTGATTGGCATCTTGATGGAGCATTTGATGTGTTCTACAGCCAACCCCACCCCAAAACATTCACAGATACAAGGCATTTAGAGGAACTCTACAATAGATATAAAGATCCTTATGCTGATATGATTATGGCTGATGGTATTAGCACTCTCTGTAATGATCTTCAGGTGGATCCTCAAGATATTGTTATGTTGGTTGTTTCTTGGCACATGAAAGCTGCTACCATGTGTGAATTCTCAAAGCAAGAATTTGTTGGTGGCTTGCAGTCTCTAGGGATAGATTCACTTGAGAAATTTCGCGAACGGATTCCATTTATGCGTTCCGAGCTCAAAGATGATCAAAAGTTTAAGGAGATTTATAATTTTGCATTTGGCTGGGCAAAGGAGAAGGGTCAAAAGTCACTGGCATTGGATACAGCAATAGGAATGTGGCAATTGTTGTTTGAAGAAAAGGAGTGGCCATTGGTTGATCATTGGTGCCAATTTTTACAAGCACGCCATAATAAGGCTATTTCTCGTGACACTTGGTCTCAACTACTTGAATTTGCAAGAAGTGTGGAGCCTACACTAGCTAATTATGATGCTGAAGGTGCTTGGCCGTATCTAATTGATGAATTTGTAGAGTATTTAATAGAGAATGGCATAATTGTGAAGTAA 750 40.13 MNKLGRGHRDKVQQFMTITGASEKVALQALKASDWHLDGAFDVFYSQPHPKTFTDTRHLEELYNRYKDPYADMIMADGISTLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFVGGLQSLGIDSLEKFRERIPFMRSELKDDQKFKEIYNFAFGWAKEKGQKSLALDTAIGMWQLLFEEKEWPLVDHWCQFLQARHNKAISRDTWSQLLEFARSVEPTLANYDAEGAWPYLIDEFVEYLIENGIIVK 249
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04849 249 Pfam UBA-like domain 9 47 - -
Cich4g04849 249 FunFam Defective in cullin neddylation protein 143 248 - -
Cich4g04849 249 SUPERFAMILY UBA-like 7 46 IPR009060 GO:0005515(InterPro)
Cich4g04849 249 Gene3D - 52 142 - -
Cich4g04849 249 ProSiteProfiles DCUN1 domain profile. 54 242 IPR005176 -
Cich4g04849 249 Pfam Cullin binding 130 240 IPR005176 -
Cich4g04849 249 CDD UBA-DCNL 8 48 - -
Cich4g04849 249 Gene3D Cullin, PONY binding domain 143 247 IPR042460 -
Cich4g04849 249 PANTHER RP42 RELATED 24 242 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Cich4g04849 249 Gene3D - 6 47 - -
Cich4g04849 249 FunFam Defective in cullin neddylation protein 6 47 - -
Cich4g04849 249 FunFam Defective in cullin neddylation protein 53 142 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04849 K17822 DCN1-like protein 1/2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:137258874 Cich9g00166 Cich-Chr9:4591496 transposed