AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04853 ATGGCGACAAAGAAGAGTGTTAGCAGTTTGAAGGAAGCAGATCTGAAGGGGAAGAAGGTGTTTATTAGGGCTGATCTCAACGTACCGTTGGATGACAGTTTTAAGATCACCGATGACACACGTATCCGCGCCGCCGTCCCCACTATCAAATACCTGATGTCCAACGGCGCCAGAGTCATCCTCTCTTCTCACCTGGGACGTCCAAAGGGTGTTACACCAAAATACAGCCTGAAACCACTCGTCCCTAGGCTCTCTGAGCTCCTTGGAGTTGAGGTCAAGATGGCAAGTGATTGCATAGGTCCAGAAGTTGAGAAACTGGTGGCAGAGCTCCCAGAAGGAGGCGTTTTGCTTCTTGAAAATGTCAGATTCTATAAAGAGGAAGAAAAGAACGAGCCCGAATTCGCAAAGAAGCTTGCATCACTAGCTGACTTGTACGTCAATGATGCTTTTGGCACTGCACATAGAGCACACGCATCTACCGAAGGTGTTACAAAGTACTTGAAGCCCTCTGTTGCTGGATTCCTCATGCAAAAGGAGCTTGATTACCTTGTTGGAGCTGTATCCAATCCCAAGAAGCCATTTGCAGCCATTGTTGGTGGGTCAAAGGTTTCAAGCAAAATTGGTGTGATTGAATCATTGTTATCGAAGGTTAACATCCTTATACTTGGTGGAGGTATGATATTCACTTTCTATAAAGCACAAGGGCTTAAAGTCGGGTCTTCACTTGTGGAAGAAGATAAACTTGACCTTGCAACATCACTTCTTGAAAAGGCCAAGGCTAAAGGGGTGTCTCTGTTACTCCCTTCTGATGTTGTCATTGCTGATAAGTTTGCTGCAGATGCCAACAGCAAGGTGGTTCCAGCCAATAGTATTCCAGATGGCTGGATGGGATTGGACATTGGTCCAGATTCCATTAAGTCATTCAGTGAAAGTTTGGATACTACCCAAACTGTTATCTGGAATGGACCTATGGGTGTGTTTGAGTTTGAGAAGTTTGCTGCAGGAACAGAGGCTATTGCCAAGAAACTGGCGGAACTTAGTGGAAAGGGAGTGACAACCATCATTGGAGGTGGTGATTCAGTTGCAGCTGTGGAAAAGGTTGGGTTAGCCGACAAGATGAGCCACATCTCGACAGGTGGCGGTGCCAGCTTGGAGCTTCTAGAAGGAAAAACACTTCCAGGAGTGCTCGCCTTGAATGACGCTTGA 1206 46.52 MATKKSVSSLKEADLKGKKVFIRADLNVPLDDSFKITDDTRIRAAVPTIKYLMSNGARVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMASDCIGPEVEKLVAELPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSSKIGVIESLLSKVNILILGGGMIFTFYKAQGLKVGSSLVEEDKLDLATSLLEKAKAKGVSLLLPSDVVIADKFAADANSKVVPANSIPDGWMGLDIGPDSIKSFSESLDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04853 401 Gene3D - 187 399 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PANTHER PHOSPHOGLYCERATE KINASE 3 400 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
Cich4g04853 401 SUPERFAMILY Phosphoglycerate kinase 8 400 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 Pfam Phosphoglycerate kinase 10 390 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 CDD Phosphoglycerate-kinase 10 400 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 113 128 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 141 163 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 195 214 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 353 364 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 172 194 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 317 342 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PRINTS Phosphoglycerate kinase family signature 376 393 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 PIRSF Pgk 2 401 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 Gene3D - 7 184 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 Hamap Phosphoglycerate kinase [pgk]. 9 400 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Cich4g04853 401 FunFam Phosphoglycerate kinase 11 184 - -
Cich4g04853 401 FunFam Phosphoglycerate kinase 189 376 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04853 K00927 phosphoglycerate kinase [EC:2.7.2.3]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr2:18353126 Cich4g04853 Cich-Chr4:137328470 dispersed
Cich Cich-Chr4:137328470 Cich7g01071 Cich-Chr7:49903816 dispersed