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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04854 ATGGCATCCGCCTTTCTTTCAAGAACTCTCTTTGCACATCGTTTCGTCTCGTCTTTCGCCATCAACCAAAACCCCCAAAAATTAGCGCCCCTTTTCTTCAAGAAACCCCTTCATTCGTGGGCTTCTCCAATTCATACGGTTTACAGGAGGCTGACCATAGTTCGTAGTGACATGGCTTCCACCATGGTTGGATCTACGTCTTCTTTTTCAACACAGTCCATGTCAACTAGCGAGCCTGTTGTTTCAGTCGACTGGCTTCATGCCAATCTTCGTGAGCCTGATATGAAGGTACTGGATGCATCCTGGTACATGCCTGATGAACAAAGAAATCCACTTCAAGAGTATCAGGTAGCCCACATCCCTGGTGCTCTTTTCTTTGATGTAGATGGGATATCTGATCGCACTACCAATTTACCACACATGCTGCCATCTGAGGAAGCATTTGCTGCTGCTGTTTCTGCTCTTGGTATCGAAAACAAAGATGGAGTTGTTGTTTATGATGGTAAAGGGATCTTCAGTGCTGCTCGTGTCTGGTGGATGTTCCGAGTTTTTGGACATGATAGAGTATGGGTGTTAGATGGAGGGCTTCCTAGGTGGCGTGCATCCGGATTTGATGTTGAATCTAGTGCTTCTGGTGATGCCATATTGAAAGCTAGTGCTGCCAGCGAGGCGATAGAAAAAGTCTACCATGGCCAGGCTGTTGGTCCGGTTACATTTCAAACAAAATATCAGCCACATCTTGTATGGACACTTGAACAGGTTAAAAAGAATACAGAAGACCAAACACATCAACATGTAGATGCTAGGTCAAAGGCCAGGTTTGATGGTGTTGCAGCTGAACCTAGAAAGGGAATAAGAAGTGGTCATGTGCCTGGGAGCAAGTGCATTCCTTTTGCTCAGATGTTAGACAGCTCACAGACACTACTATCTGCAGACCAGCTTAAGAAGAAGTTTGAACAAGAGGGAATCTCATTGGATGAACCTGTTATGGCTTCATGTGGCACTGGTGTTACCGCGTGCATTCTTGCATTGGGATTCCATAGACTTGGGAAGACAGATGTTCCAGTTTATGATGGATCTTGGACAGAATGGGGAGCACAAGAAGATACTCCTGTTGCAACTTCAAATCCATCTTCTTGA 1140 45.35 MASAFLSRTLFAHRFVSSFAINQNPQKLAPLFFKKPLHSWASPIHTVYRRLTIVRSDMASTMVGSTSSFSTQSMSTSEPVVSVDWLHANLREPDMKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGFDVESSASGDAILKASAASEAIEKVYHGQAVGPVTFQTKYQPHLVWTLEQVKKNTEDQTHQHVDARSKARFDGVAAEPRKGIRSGHVPGSKCIPFAQMLDSSQTLLSADQLKKKFEQEGISLDEPVMASCGTGVTACILALGFHRLGKTDVPVYDGSWTEWGAQEDTPVATSNPSS 379
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04854 379 ProSitePatterns Rhodanese signature 1. 115 126 IPR001307 GO:0004792(InterPro)
Cich4g04854 379 CDD TST-Repeat-2 250 366 - -
Cich4g04854 379 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 78 209 IPR036873 -
Cich4g04854 379 ProSiteProfiles Rhodanese domain profile. 259 373 IPR001763 -
Cich4g04854 379 ProSiteProfiles Rhodanese domain profile. 91 208 IPR001763 -
Cich4g04854 379 ProSitePatterns Rhodanese C-terminal signature. 354 364 IPR001307 GO:0004792(InterPro)
Cich4g04854 379 Pfam Rhodanese-like domain 250 366 IPR001763 -
Cich4g04854 379 Pfam Rhodanese-like domain 82 201 IPR001763 -
Cich4g04854 379 Gene3D - 244 376 IPR036873 -
Cich4g04854 379 SMART rhod-4 249 370 IPR001763 -
Cich4g04854 379 SMART rhod-4 81 205 IPR001763 -
Cich4g04854 379 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 252 376 IPR036873 -
Cich4g04854 379 CDD TST-Repeat-1 80 203 - -
Cich4g04854 379 PANTHER THIOSULFATE SULFERTANSFERASE 73 375 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Cich4g04854 379 FunFam Sulfurtransferase 244 375 - -
Cich4g04854 379 Gene3D - 72 214 IPR036873 -
Cich4g04854 379 FunFam Sulfurtransferase 73 215 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04854 K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:137332702 Cich7g00522 Cich-Chr7:17088727 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g00072 . 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 69.658 0.0 668.0
Cich9g01780 . 10 116 Sulfurtransferasese/Rhodanese gene family AT5G66040 52.778 5.13e-37 121.0
Cich9g01805 . 183 264 Sulfurtransferasese/Rhodanese gene family AT5G23060 58.537 3.90e-25 96.3
Cich8g00979 . 46 222 Sulfurtransferasese/Rhodanese gene family AT5G55130 30.729 3.52e-14 72.8
Cich8g01084 . 23 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 56.707 1.14e-61 188.0
Cich8g01732 . 1 94 Sulfurtransferasese/Rhodanese gene family AT5G55130 48.958 3.15e-18 82.8
Cich8g03077 . 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 53.564 1.63e-140 409.0
Cich7g00522 . 233 321 Sulfurtransferasese/Rhodanese gene family AT1G79230 71.91 1.73e-43 145.0
Cich7g02700 . 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 34.021 3.77e-08 48.5
Cich6g02374 . 28 146 Sulfurtransferasese/Rhodanese gene family AT2G17850 52.5 1.32e-41 137.0
Cich6g02377 . 24 147 Sulfurtransferasese/Rhodanese gene family AT2G17850 52.8 2.49e-43 139.0
Cich5g00324 . 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 34.021 2.54e-08 49.3
Cich5g00871 . 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 63.88 5.81e-137 387.0
Cich4g00601 . 82 242 Sulfurtransferasese/Rhodanese gene family AT4G01050 42.857 1.52e-29 122.0
Cich4g01060 . 1 230 Sulfurtransferasese/Rhodanese gene family AT2G42220 64.348 1.15e-109 313.0
Cich4g02051 . 82 455 Sulfurtransferasese/Rhodanese gene family AT2G40760 74.599 0.0 585.0
Cich4g03687 . 250 493 Sulfurtransferasese/Rhodanese gene family AT1G09280 55.469 1.42e-88 271.0
Cich4g04854 . 1 379 Sulfurtransferasese/Rhodanese gene family AT1G79230 72.585 0.0 582.0
Cich3g01207 . 243 348 Sulfurtransferasese/Rhodanese gene family AT4G01050 58.491 2.69e-34 121.0
Cich3g03549 . 6 383 Sulfurtransferasese/Rhodanese gene family AT5G23060 63.613 4.59e-174 491.0
Cich3g04415 . 138 218 Sulfurtransferasese/Rhodanese gene family AT1G79230 73.404 1.65e-37 143.0
Cich2g03864 . 272 357 Sulfurtransferasese/Rhodanese gene family AT4G01050 60.465 5.29e-22 88.2
Cich1g00957 . 31 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 64.706 1.63e-80 238.0
Cich1g03128 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 67.308 4.08e-104 304.0
Cich1g04215 . 17 145 Sulfurtransferasese/Rhodanese gene family AT5G03455 72.093 7.68e-69 203.0