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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04892 ATGGCCTTCATCTCCAAGGTTCACAGCTTCTCCGGTGACTTTCAAACTCCGGCGACCACCATTCCAATGTGGTACGATGACACTACTTCACCCAGTTTCTACGATACCTATGGGATGACAATGACACCGGAATATGACATCACGACACCATTATCTCGATCATCGTCATGGAAGGCTTCGTTCCCGGAGAGATTTGGGGTTTCTGAGATGGTGGTTCCAACGTCACCGACTGGATTTAGTTCCATTCCCGCCGGAAGTGATTATCAGAAGGTTGAAAAGGATGACTATTTTTGTAGCAGCGGTGGCTATAGTACCAACTCATGGTCATCTTATCCCACTGCACCCACCAATTGGGAAATGGAAAACCAGAAGACGAGTACAGATATCGAAGAACCGACATTAAAGATCGGTAGGTATTCTGTGGAAGAAAGGAAGGACAAGATCATGAAGTATCTCAAGAAGAGAAATCAAAGGAACTTCAATAAGACGATTAAGTATGAATGCCGGAAGACGTTAGCTGACAAGCGAATAAGAGTTCGGGGGAGGTTTGCGAAGAACAAAAACGATCATCATCATCATCTTCATGACCATCATCAACCATGTGAAGATCAAGTGCTTCCCAACATCAATACTAACAATAATCCTTGTGTAGAAGACATTCAGCAACTTTACACCAATGATTTTATGATGAAGCATGATTATGATGAAGAAGAAGAATGGCTGCAAGAAGCAATGGCAAGTTTAATGTATTCACCATATATAACACAGATTAATTAG 777 42.21 MAFISKVHSFSGDFQTPATTIPMWYDDTTSPSFYDTYGMTMTPEYDITTPLSRSSSWKASFPERFGVSEMVVPTSPTGFSSIPAGSDYQKVEKDDYFCSSGGYSTNSWSSYPTAPTNWEMENQKTSTDIEEPTLKIGRYSVEERKDKIMKYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNKNDHHHHLHDHHQPCEDQVLPNINTNNNPCVEDIQQLYTNDFMMKHDYDEEEEWLQEAMASLMYSPYITQIN 258
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04892 258 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 51 245 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cich4g04892 258 Pfam CCT motif 144 186 IPR010402 GO:0005515(InterPro)
Cich4g04892 258 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04892 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:138574053 Cich5g02396 Cich-Chr5:44383289 dispersed
Cich Cich-Chr4:138574053 Cich9g01081 Cich-Chr9:22444772 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g00396 . 272 319 C2C2-CO-like Transcription Factor family AT3G02380 62.5 1.07e-15 72.4
Cich9g00421 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 45.198 4.14e-77 237.0
Cich9g01081 ACH 193 333 C2C2-CO-like Transcription Factor family AT5G15850 33.548 6.56e-12 64.3
Cich9g01385 . 274 305 C2C2-CO-like Transcription Factor family AT5G57660 68.75 1.13e-08 50.8
Cich9g01575 . 18 157 C2C2-CO-like Transcription Factor family AT2G47890 48.235 2.32e-47 155.0
Cich9g02088 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 51.823 2.03e-97 293.0
Cich8g00518 ACH 1 64 C2C2-CO-like Transcription Factor family AT1G75540 60.938 4.88e-20 82.4
Cich8g00534 ACH 4 174 C2C2-CO-like Transcription Factor family AT5G54470 48.333 6.94e-33 117.0
Cich8g01714 . 11 401 C2C2-CO-like Transcription Factor family AT2G33500 38.688 8.96e-79 249.0
Cich7g00497 ACH 1 298 C2C2-CO-like Transcription Factor family AT1G78600 52.812 6.72e-94 278.0
Cich7g00735 . 4 75 C2C2-CO-like Transcription Factor family AT5G54470 72.222 4.08e-33 116.0
Cich7g01318 ACH 289 399 C2C2-CO-like Transcription Factor family AT1G68520 45.536 1.01e-20 91.7
Cich7g02581 . 59 110 C2C2-CO-like Transcription Factor family AT1G78600 73.077 6.01e-22 90.9
Cich6g00109 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 5.62e-10 57.4
Cich6g02012 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 52.547 3.91e-121 352.0
Cich6g02991 ACH 334 386 C2C2-CO-like Transcription Factor family AT5G24930 50.943 5.64e-11 62.0
Cich5g01312 . 3 221 C2C2-CO-like Transcription Factor family AT3G21150 29.289 1.68e-17 76.3
Cich5g02396 ACH 334 390 C2C2-CO-like Transcription Factor family AT5G24930 44.615 7.88e-11 62.0
Cich4g00153 . 9 328 C2C2-CO-like Transcription Factor family AT2G47890 44.959 1.02e-92 280.0
Cich4g00842 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 4.80e-11 59.7
Cich4g02015 ACH 285 330 C2C2-CO-like Transcription Factor family AT5G57660 52.174 6.15e-09 53.5
Cich4g04203 ACH 1 206 C2C2-CO-like Transcription Factor family AT1G75540 54.589 3.54e-65 202.0
Cich4g04391 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 54.167 8.62e-137 394.0
Cich4g04512 ACH 54 280 C2C2-CO-like Transcription Factor family AT1G78600 40.084 2.45e-43 145.0
Cich4g04892 . 202 270 C2C2-CO-like Transcription Factor family AT2G24790 37.838 1.15e-08 52.8
Cich3g02116 . 4 76 C2C2-CO-like Transcription Factor family AT5G54470 67.568 1.36e-28 107.0
Cich3g04998 ACH 55 347 C2C2-CO-like Transcription Factor family AT3G02380 40.061 2.85e-60 193.0
Cich2g00235 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 3.49e-10 58.2
Cich2g02825 ACH 1 220 C2C2-CO-like Transcription Factor family AT4G27310 34.498 2.31e-29 108.0
Cich2g02899 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 58.407 3.98e-82 241.0
Cich2g04216 ACH 4 274 C2C2-CO-like Transcription Factor family AT2G24790 45.221 4.00e-66 205.0
Cich1g01711 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 52.03 8.93e-133 382.0
Cich1g01821 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 47.639 3.81e-63 200.0
Cich1g01848 ACH 54 299 C2C2-CO-like Transcription Factor family AT1G78600 43.922 3.53e-55 176.0
Cich1g02772 ACH 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.457 1.14e-95 288.0
Cich1g03387 ACH 306 388 C2C2-CO-like Transcription Factor family AT5G24930 40.964 3.39e-11 62.8
Cich1g03627 . 1 64 C2C2-CO-like Transcription Factor family AT1G75540 60.938 4.88e-20 82.4
Cich1g04736 ACH 190 270 C2C2-CO-like Transcription Factor family AT2G24790 44.444 1.13e-11 62.8
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cich CCT 3.7e-17 CL0281 TR Others