AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04935 ATGGCTTCTCCTGGAAATCAAAATCAACAACCAGGTGGAGGTCCATTTGATGTTCAAAGATTGTTCAACCCTTCTTCTTCACCACCACCAATCACAACAACCCTCCAAAACCCTAACCATCCTTATCCTCCTCCATCTACCGCCGCTTCTTATCCTCCACCGACCGTCACCGGCGGCCCTTACTCTTACCTCCCTCCTCAAACCAACCCTCTTTTCCACCATCAATTCCATATCCCACCACCCCCTTTCCACCCTCAACAACAACCAGACAATCATTTGCCTTCTAATTTGCAACATCAGCGATCACTTCCTTATCCTACATCCCCTCTTCAACCTCCTAGCCCTAACAACACGAACCCTAACCATGGAGCTCGACTCATGGCCCTTTTAAGCGCCCCACCGCCTTCCATTCCCGATATTCCTTCCCAATCATCCATTCCGTTACCTAACCCTATGCTTCCTTCATCAACCGGTCCATCGCGTATGCCGAGCAGTAAGCTACCAAAAGGACGACATCTAGTCGGCGATCGCGTTGTGTATGACATAGATGTTAGGTTGCCTGGAGAGATTCAGCCCCAACTTGAGGTCACTCCCATCACTAAGTATGGTTCCGATCCTGGTCTGGTGGTCGGTCGTCAGATTGCTGTTAATAAGACGTATATATGTTATGGTTTGAAACCTGGAACTATCAGAGTTCTTAATATAAACACTGCATTAAGATCTCTGCTCAAAGGTCTTGCTCAGAGGGTTACAGATATGGCTTTCTTCGCTGAAGATGTTCACCTTTTAGCAAGTGCAAGCATGGATGGACGAGTTTATGTGTGGAAGATTACAGAAGATCCTGATGAAGATGATAAGCCACAAATCACAGGAAAGACAGTCACCGCCGTCCAAATTCTGGGAGAAGCAGAACCTGTTCGTCCTCGAGTTTGTTGGCACTGCCATAAACAAGAGGTTCTTGTAGTTGGAATTGGAAACCGTATACTTAGATTTGACACTACAAAGATTGGGAGAGGTGAATCATACTCTGCAGATGAACCTCTCAAATGCCACGTGGATAAGTTGATTGATGGAATTCAATTTGTTGGTAAACATGATGGTGAAGTGACAGATTTATCAATGTGTCAATGGATGACCACTCGTTTGGTTTCTGCTTCAGTAGATGGAACGATAAAAATCTGGGAAGATCGCAAATCATCTCCAATTGCAATACTGAGACCACACGATGGTCATCCGGTCAACTCTGTTACATTCTTAACCGCCCCTCATCGCCCAGATCACATCATACTTATCACCGGGGGTCCATTGAACCGCGAAATGAAAATATGGGTATCAGAAAGTGAAGAAGGGTGGTTGCTTCCTAGTGATGCTGACTCATGGCATTGTACTCAAGCATTGGAATTGAAGAGTTCTGAAACAAGAATTGAAGATTCCTTCTTTAATCAAGTTGTTGCATTATCTAATTCCGGTCTTGTATTACTAGCAAATGCTAAAAAGAATGCAATATATGCTGTCCACCTGGATTACGGTCCAAACCCGGAAACCACTCGTATGGATTACATTGCAGAATTCACTGTGACTATGCCAATATTAAGCTTTACTGGCACTAGTGATATTTTGTCCCATGGGGACCACATTGTCCAGGTGTATTGTGTCCAGACACAAGCCATTCAACAATATGCTTTGGACTTATCCCAATGCCTACCACCTCCATTGGGCGCAGAAGTTTTTACAGTTCCGGAACCTTCCGGAAGCAAACCGGATGACATGCCTTTGACGGAAGCTTCCATTAACGAGACCGATATTTCCTGTATTGTGTCACCGACAGTTCCTCCGAGTCCTAAGTTTTCTAGAGACGTTTCTGACATGAGAAGTCCATCTGGCGGTTTTGAGCCACGTCAGCAAGTGAACGGTTATGGTGATCAGAAGATTCTAGAAACTTCCAATTCAAATTTGTCTAATGTGACATCGCTGGATGATGATGTAAGGGCTGATGAGAGTAAAGTTGTTAAAGACGATCGAACGGTTAAATTTATGCGTCCAACTCATTTGGTAACACCTTCTGAATTGATGGCCACGTTATCAACTGAAGTAAATAATATTACTGAGAATACACATGATGTGGCGGTCAACCCCGATACACAGAATGCTGAGGTGGAGGTTAAGGTTGTGGGCGAAATGGGAACGAGTCGAAATGCTGACGTGGCAAATGAAAAGTCAAAATTATTCTCGTCACAGGCATCGGGACTCGGGATCGAAATGGCACGGGAAAGTTACGAGTCTAAACAACTTGATGACATAACAGATCAAACTTTAGATGCTCAGGATGATGTTCAAGACATGGAAATTGAGACGTCTGTTCCTGTGGGTCCCACATCAAAATCAAAAAAGAAAAAGGGAAAGAATGCTCAAATAGCAGGCCCAAGTGTGTTAAAGTCAACCGATTCATGTGATGAAATAGGTGTGGGTTTGAGTATGAGCATCCTTTCACAAATTCAGTCAATGCAAGAAACAATTGGTCAGATTTTGACCAGTCAAAAGGAAATCCAGAAGCAGATTCCGGTGGTGGTTGCGGGCCCGGTTACAAAAGAAGGAAAAAGAATCGAGGCGGGAATTGTAAAAACCATGGAGAAAATCCATAAAGCAAATTCTGATGCTTATGTGGCGCGTTGTCAAGAAGAGTTTGCCAAACAGGAAAAGTCAAACCGGGACCGCCATCAGCAAATTTCCATGTCAGCAGGAAACGGTCACAAGGAATTGCTTGCAGCATCTGAAAAAATTTTAAAGAAGGAAATGGCTGCTGTGGGGCCCGCTGTTGGGCGTTCTGTTACTCCTGTTATCGAAAAGGCAGTTGCAACAGCTATCACAGAGGCTTTCCAGAGAGGTGTAGGTGACAAGGCTGTAAATCAGTTAGAAAAAACAGTTAGTTCTAAGCTTGAAGCGACTGTTTCTAGGCAAATTCAAGTTCAATTCCAAACTTCTGGGAAACAAGCTTTACAGGAAGCACTCAAGTCCAGTATGGAAGCTTCCGTTCTTCCTGCCTTCGAGATGTCATGCAAAACCATGTTTGACCAAATTGACTCAACATTTCAAAAAGGAATGGTTGACCATACAACTGCAGCTCACCAGCAAATTGAATCCATACATTCGCCTTTAGCATTTGCTTTGAGGGATACCATAAATTCAGCATCATCGATGACTCAAACATTGAGCAGTGAGCTGACCGATGGTCAAAGAAAATTGGTAGCTCTTGCAGGGTCGAAATCGGTAAATCCTTTAATAAGCCAAATCAGCAACGGGCCCACAGGCGGTTTCCATGAGAAGATCGAAACACCAGTGGATCCAACAAAAGAGCTATCAAGATTAGTATACGAGCACAAATACGAGGAGGCTTTTACTTCCGCCCTTCAAAGAAGCGATGTTAGAATTGTTTCCTGGTTATGCTCACAGGTGGATTTACAGGGGCTATTAACGAGCAATTCTCTACCTCTGAGCCAAGGGGTATTACTGTCATTACTGCAGCAGTTGGCATGTGATATTGGGAACGATACATCGAGGAAACTTGGATGGATGATGGATGTGGTGGTGGCGATCAAACCAACGGACGGGATCATTGCGATGCATGTGAGGCCGATATTTGAACAAGTGTATTCGATACTCAACCATCAAGTCAGCATTCCCACCACTTCGGTTGCTGAGCTGTCGAGCATACGCGTTGTCATGAGACTTGTCAACTCGACGCTTCGGAGCTTGTAA 3756 44.33 MASPGNQNQQPGGGPFDVQRLFNPSSSPPPITTTLQNPNHPYPPPSTAASYPPPTVTGGPYSYLPPQTNPLFHHQFHIPPPPFHPQQQPDNHLPSNLQHQRSLPYPTSPLQPPSPNNTNPNHGARLMALLSAPPPSIPDIPSQSSIPLPNPMLPSSTGPSRMPSSKLPKGRHLVGDRVVYDIDVRLPGEIQPQLEVTPITKYGSDPGLVVGRQIAVNKTYICYGLKPGTIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASMDGRVYVWKITEDPDEDDKPQITGKTVTAVQILGEAEPVRPRVCWHCHKQEVLVVGIGNRILRFDTTKIGRGESYSADEPLKCHVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAILRPHDGHPVNSVTFLTAPHRPDHIILITGGPLNREMKIWVSESEEGWLLPSDADSWHCTQALELKSSETRIEDSFFNQVVALSNSGLVLLANAKKNAIYAVHLDYGPNPETTRMDYIAEFTVTMPILSFTGTSDILSHGDHIVQVYCVQTQAIQQYALDLSQCLPPPLGAEVFTVPEPSGSKPDDMPLTEASINETDISCIVSPTVPPSPKFSRDVSDMRSPSGGFEPRQQVNGYGDQKILETSNSNLSNVTSLDDDVRADESKVVKDDRTVKFMRPTHLVTPSELMATLSTEVNNITENTHDVAVNPDTQNAEVEVKVVGEMGTSRNADVANEKSKLFSSQASGLGIEMARESYESKQLDDITDQTLDAQDDVQDMEIETSVPVGPTSKSKKKKGKNAQIAGPSVLKSTDSCDEIGVGLSMSILSQIQSMQETIGQILTSQKEIQKQIPVVVAGPVTKEGKRIEAGIVKTMEKIHKANSDAYVARCQEEFAKQEKSNRDRHQQISMSAGNGHKELLAASEKILKKEMAAVGPAVGRSVTPVIEKAVATAITEAFQRGVGDKAVNQLEKTVSSKLEATVSRQIQVQFQTSGKQALQEALKSSMEASVLPAFEMSCKTMFDQIDSTFQKGMVDHTTAAHQQIESIHSPLAFALRDTINSASSMTQTLSSELTDGQRKLVALAGSKSVNPLISQISNGPTGGFHEKIETPVDPTKELSRLVYEHKYEEAFTSALQRSDVRIVSWLCSQVDLQGLLTSNSLPLSQGVLLSLLQQLACDIGNDTSRKLGWMMDVVVAIKPTDGIIAMHVRPIFEQVYSILNHQVSIPTTSVAELSSIRVVMRLVNSTLRSL 1251
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04935 1251 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 23 1250 IPR045152 GO:0000932(PANTHER)|GO:0031087(PANTHER)|GO:0031087(InterPro)
Cich4g04935 1251 SMART WD40-4 356 395 IPR001680 GO:0005515(InterPro)
Cich4g04935 1251 SMART WD40-4 398 444 IPR001680 GO:0005515(InterPro)
Cich4g04935 1251 SMART WD40-4 236 276 IPR001680 GO:0005515(InterPro)
Cich4g04935 1251 MobiDBLite consensus disorder prediction 1 33 - -
Cich4g04935 1251 MobiDBLite consensus disorder prediction 134 156 - -
Cich4g04935 1251 MobiDBLite consensus disorder prediction 608 637 - -
Cich4g04935 1251 Gene3D - 358 566 IPR015943 GO:0005515(InterPro)
Cich4g04935 1251 FunFam enhancer of mRNA-decapping protein 4 195 508 - -
Cich4g04935 1251 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 404 IPR001680 GO:0005515(InterPro)
Cich4g04935 1251 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1121 1226 IPR049404 -
Cich4g04935 1251 MobiDBLite consensus disorder prediction 89 105 - -
Cich4g04935 1251 SUPERFAMILY WD40 repeat-like 198 547 IPR036322 GO:0005515(InterPro)
Cich4g04935 1251 Gene3D - 1164 1250 IPR044938 -
Cich4g04935 1251 MobiDBLite consensus disorder prediction 1 170 - -
Cich4g04935 1251 MobiDBLite consensus disorder prediction 775 805 - -
Cich4g04935 1251 Gene3D - 213 357 IPR015943 GO:0005515(InterPro)
Cich4g04935 1251 MobiDBLite consensus disorder prediction 34 51 - -
Cich4g04935 1251 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 277 IPR001680 GO:0005515(InterPro)
Cich4g04935 1251 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 196 507 IPR032401 -
Cich4g04935 1251 FunFam Enhancer of mRNA-decapping protein 4 1164 1250 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04935 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
63095 Cich4g04935 Cich7g00990
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:140153793 Cich7g00990 Cich-Chr7:39434959 wgd