AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04943 ATGGCTGTGGTATTGGGAACTCAATTGACTTGTGGTCAAAAGCCAGAAAACCCTCTGTTGTTACTTGGACAATATAGTGATGAAGAAATGGAGGAAGATTCGGGTAAAGAAATAAGCCATGATTCTGGAGATAATTCATCAGCTGAGCTTGATGAACAGGTAAAGGTTGACAGTCATGAGGGTACAGAAGCAGATAAAGATGAAAACTTGACTGCTGAAAAAGCTGATCAAGAGAACAAAGAGCAGCACTCTTGTTCATTGGATGTGGAAGAAAACGGTGTTGTTGAAGATATTACGGTTTTGCCCTCACACAAAGACATGGATCCAGTGGAGCAGACCTCTGTGACATGGACATCCGATACACAAACAGAAAACACGGATTCAGGATGGAAAATGGTGTTACATGAAGAGAGTAATTCATATTATTACTGGAATGTTTTGACCGGTCAAACTTCTTGGGAAGTCCCTGTTGATCTAGTTCAAGGAAATGAATCAGCCTATCAGCCTAGTGTAACTTTAGATGCAGAAATAGAAGCTTCTATAAACAACGGGCCCACAAAATCTGTGGTTTTTGAGGTCAGTGAAACCGATAGTGGTAGGCCTGATATAGAAGTGCATAATGAAAACCATACAGATGTGGTGGAGGGCAATTATGTCAATACAGTAGATGACAAAAAGACATCCAGTGCAGATGGTGTGAATTATAATGATGCTTTTAATAATGGGGAAGGTCAATATACCGATTCCTGTATTCAAGGAACAGTTGGTGATCTGTCTTCTGATTCTTACCGTCTTTTGCAACTCGGTGAAAATCTATCAGAAAGATTGAAATCTTTGAAAGTGGAAAATGAAAATATATTAAAATTGATGATTGAAGTTGATGTAAGACTTGCAGACATTAAGTCACTTGTACCTTACGGATCATCATTGCTTCCTTTCTGGTTGCATTCCGAAAATCAGCTTAGAAAACTGGAAGCTTCCATCAACAATGAGATTCTTCAACATTCTCAATTAAGTCAATTTCCGAATGTTGTTGAAACAAATGAGCCAGAAAAGAAAGTTCTAGAAAATGAAAAGGACAATGCAATTCCAGATGATGACATGGATGTTGAAATGGAAGTTGAAGATGAATCAGGAGTCCAAAACAGGCCTCAATCTGAAGAAGAATTTAAGGCCCCACCACCGCCAAATGACGAGTGGGTCCCACCACCGCCACCGCCACCGCCGGATGAAGCGGCCTTCCCTCCACCACAGGCTTACTCATATGGAGAAGAATATAATTTTACTTACCCGGGGTCAACTTTCGAATACTATGGTCAACAAGTTCCAAATGGTGATTATTATGTAGATGCTAATGGATGTCAAGTAGCTGGTCCGTTATATTACACATATCCAGGTGGCACTTCAGTAGTGGAAGCTGTAGAGCCTGTGACATATTACACTCTACAAGAAGGGTCTGTGTCTGTGTCTGTACCAATTCAGCCAGTCATTGGCAGTGAAAGTGTTATTACATCTGAACCAGTAACTTCTGTGTCGGCTCCAACTGAACCGATTCCTAAGGCCCAACCTAAAGTTACAAAAAATAAAAAAAGAACAGCTGCTACAGTGCCAGGTCTAAGGTCCAACAAGAAAGTTTCAGGCTTGGTGGATAAGTGGAAAGCTGTAAAAGAGGAATTACACGAAGATGAAGAAGACGAAGAACCTGAAAATGCTTTAGAAGCTTTAGAGAAGAAAAAGCAACGAGAGATTGAGCAATGGCGTGCACAGCAGATTGCAACTGGAGAAGCAAAAGAAAATGCTAACTTTCAGCCTCTTGGTGGTGATTGGCGGGAGAGAGTTAGGCGGAAGAGAGCTAAAAAATCAATGGAAGCTGAAGAACATCAAGTAAAGGGCAATGATGTCACGAACCAAAAGCCTGATCTTGTTCAACTTACAAAACAACTCCCATCCGGTTGGCAGGCATATTGGGATGAAGCATCGAAGCAAGTTTATTATGGGAACTCAAAAACATCAGAGACATCATGGACTAAACCTAAAAATTGA 2043 40.77 MAVVLGTQLTCGQKPENPLLLLGQYSDEEMEEDSGKEISHDSGDNSSAELDEQVKVDSHEGTEADKDENLTAEKADQENKEQHSCSLDVEENGVVEDITVLPSHKDMDPVEQTSVTWTSDTQTENTDSGWKMVLHEESNSYYYWNVLTGQTSWEVPVDLVQGNESAYQPSVTLDAEIEASINNGPTKSVVFEVSETDSGRPDIEVHNENHTDVVEGNYVNTVDDKKTSSADGVNYNDAFNNGEGQYTDSCIQGTVGDLSSDSYRLLQLGENLSERLKSLKVENENILKLMIEVDVRLADIKSLVPYGSSLLPFWLHSENQLRKLEASINNEILQHSQLSQFPNVVETNEPEKKVLENEKDNAIPDDDMDVEMEVEDESGVQNRPQSEEEFKAPPPPNDEWVPPPPPPPPDEAAFPPPQAYSYGEEYNFTYPGSTFEYYGQQVPNGDYYVDANGCQVAGPLYYTYPGGTSVVEAVEPVTYYTLQEGSVSVSVPIQPVIGSESVITSEPVTSVSAPTEPIPKAQPKVTKNKKRTAATVPGLRSNKKVSGLVDKWKAVKEELHEDEEDEEPENALEALEKKKQREIEQWRAQQIATGEAKENANFQPLGGDWRERVRRKRAKKSMEAEEHQVKGNDVTNQKPDLVQLTKQLPSGWQAYWDEASKQVYYGNSKTSETSWTKPKN 680
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04943 680 ProSitePatterns WW-rsp5-WWP domain signature. 652 678 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 MobiDBLite consensus disorder prediction 508 533 - -
Cich4g04943 680 CDD WW 128 158 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 Coils Coil 569 589 - -
Cich4g04943 680 MobiDBLite consensus disorder prediction 342 413 - -
Cich4g04943 680 MobiDBLite consensus disorder prediction 614 633 - -
Cich4g04943 680 SUPERFAMILY WW domain 643 678 IPR036020 GO:0005515(InterPro)
Cich4g04943 680 ProSiteProfiles WW-rsp5-WWP domain profile. 646 680 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 MobiDBLite consensus disorder prediction 389 413 - -
Cich4g04943 680 CDD WW 649 678 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 Gene3D - 118 162 - -
Cich4g04943 680 Pfam WW domain 128 156 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 Pfam WW domain 648 678 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 MobiDBLite consensus disorder prediction 1 88 - -
Cich4g04943 680 ProSiteProfiles WW-rsp5-WWP domain profile. 124 158 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 PANTHER OS06G0298400 PROTEIN 350 496 - -
Cich4g04943 680 MobiDBLite consensus disorder prediction 614 639 - -
Cich4g04943 680 SUPERFAMILY WW domain 122 158 IPR036020 GO:0005515(InterPro)
Cich4g04943 680 Gene3D - 643 680 - -
Cich4g04943 680 ProSitePatterns WW-rsp5-WWP domain signature. 130 156 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 MobiDBLite consensus disorder prediction 33 87 - -
Cich4g04943 680 SMART ww-5 647 680 IPR001202 GO:0005515(InterPro)
Cich4g04943 680 SMART ww-5 125 158 IPR001202 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04943 K24774 formin-binding protein 4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:105264356 Cich4g04943 Cich-Chr4:140369041 dispersed
Cich Cich-Chr4:140369041 Cich8g01498 Cich-Chr8:46795868 dispersed