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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04960 ATGGCTGCTCAGGCTGTGGAGTCTGCAGCGGTGACGGCTCTGCGGTCGGTTCTTCACCGTGTGCGACATGCGGCGGAGAGATCTGGCCGCCATGCTGATGATGTGCGCGTGATTGCAGTGAGCAAGACTAAACCTATCTCTCTCATCCGCCAAGTTTACGACACCGGACACCGTTGTTTTGGGGAAAATTATGTCCAAGAGTTCATCGAAAAGGCTCCTCAGCTTCCCAAGGATATCGATTGGCACTTTATTGGACATTTACAGAGCAATAAAGCAAAATCCCTACTCGCTGCTGTTCCAAATCTGTCGATGGTACAAGGTGTAGATAACGAGAAGATTGCAAATCACCTTGATCGTGCAGTTTCAAGCATTGGAAGAAAGCCTTTGTCAGTCATGGTCCAAGTAAATACCAGTGGAGAGATATCAAAATCCGGGATTGAACCTGCAAGTTGTGTAGATCTTGTGAAGCATGTTAAGTTTAGCTGCCCAAACCTCGTGTTTTCTGGCTTAATGACTATTGGAATGCCAGATTATACATCCACTCCAGAGAACTTCAAGACGTTGTCAAGGTGCAGAAGTGAGATCTGTAAGGAACTTGGAATGCTAGAAAAGCAGTGTGAGCTGTCAATGGGCATGTCTGGGGACTTTGAACTAGCGATTGAAATGGGAAGCACAAATGTAAGGATTGGGTCAACGATTTTTGGACCAAGGGAGTATCCAAAGAAACAGTAG 732 46.31 MAAQAVESAAVTALRSVLHRVRHAAERSGRHADDVRVIAVSKTKPISLIRQVYDTGHRCFGENYVQEFIEKAPQLPKDIDWHFIGHLQSNKAKSLLAAVPNLSMVQGVDNEKIANHLDRAVSSIGRKPLSVMVQVNTSGEISKSGIEPASCVDLVKHVKFSCPNLVFSGLMTIGMPDYTSTPENFKTLSRCRSEICKELGMLEKQCELSMGMSGDFELAIEMGSTNVRIGSTIFGPREYPKKQ 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04960 243 PIRSF YBL036c-PLPDEIII 1 243 IPR011078 GO:0030170(InterPro)
Cich4g04960 243 Hamap Pyridoxal phosphate homeostasis protein. 12 236 IPR011078 GO:0030170(InterPro)
Cich4g04960 243 Pfam Alanine racemase, N-terminal domain 19 236 IPR001608 -
Cich4g04960 243 SUPERFAMILY PLP-binding barrel 10 235 IPR029066 -
Cich4g04960 243 Gene3D Alanine racemase 1 243 IPR029066 -
Cich4g04960 243 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 3 240 IPR011078 GO:0005622(PANTHER)|GO:0030170(InterPro)|GO:0030170(PANTHER)
Cich4g04960 243 FunFam Pyridoxal phosphate homeostasis protein 2 243 - -
Cich4g04960 243 CDD PLPDE-III-YBL036c-euk 14 235 - -
Cich4g04960 243 ProSitePatterns Uncharacterized protein family UPF0001 signature. 81 95 IPR011078 GO:0030170(InterPro)
Cich4g04960 243 NCBIfam YggS family pyridoxal phosphate-dependent enzyme 16 237 IPR011078 GO:0030170(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04960 K06997 PLP dependent protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:140854685 Cich5g04432 Cich-Chr5:124983420 dispersed