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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04964 ATGTTTTCTACACATGCCTTGTATGGCACCAAACTATCTCCTGAACAAAACAAGATCTTTGGTCACTCAAACAAGTCGGGTTTCTTCCATAAGCATCTGAATATCAAGAAAAACCAATCACACACTGAGAATTTGATGAGCTGGTGTAATAATGGAAGGATATCATCCAAGGATAGAATCCAATGTAAGGCATTACAACTCCAAACCAGCCCCACCTTCTTGAAAGGAGATAAATTTCAACTTCAAGATGTGATTGAAGCACAACAATTTGACAGAGATACCCTGAGTGCCATATTTGAAGTGGCACGTGAAATGGAAACAATTGAAAAGAAGTCACATGGAAGCCAGCTTTTGAATGGATATCTAATGGCTACTCTTTTCTATGAGCCTTCAACCAGAACCAGGCTTTCATTTGAGTCAGCAATGAAGCGCTTAGGTGGCGAAGTTCTAACAACAGAAAATGCACGCGAGTTCTCTTCTGCTGCAAAGGGAGAAACACTTGAAGATTCTATTAGAACAGTGGAAGGGTATTCGGATATAATTGTAATGAGACATTTTGAAAGTGGTGCTGCCAGAAGAGCAGCCATGACAGCTAACATTCCCGTGATCAATGCTGGCGATGGTCCAGGTCAGCATCCTACTCAGGCTCTTCTGGATGTGTACACTATTGAAAGAGAGATAGGAAAGCTGGATGGAATTAAAGTTGGACTTGTTGGGGATCTTGCTAATGGGAGAACAGTTCGGTCTTTAGCATATCTTTTAGCCAAATATAATGATGTGAAAATCTACTTTGTTTCACCAGAAGTTGTAAAGATGAAGGAGGATATTAAGGAATACTTAACATTAAATGGAGTTGAATGGGAAGAAAGTAAGGATTTGAAGGAAGTGGCATCAAAATGTGATGTGGTGTACCAAACTCGCATACAGAAAGAACGTTTTGGAGAGAGAAGTGATATTTATGAAGAAGCTCGTGGGAAATACATTATTGATACAGATGTGTTGGGTGTCATGCAGAAACATGCCATTGTCATGCATCCTCTCCCAAGGCTTGATGAGATAACTGTGGATGTAGATGGGGATCCAAGGGCTGCTTATTTTAGACAAGCAAAAAATGGACTCTACATTAGGATGGCTTTGCTGAAGCTTTTACTTGTTGGTTGGTGA 1164 40.29 MFSTHALYGTKLSPEQNKIFGHSNKSGFFHKHLNIKKNQSHTENLMSWCNNGRISSKDRIQCKALQLQTSPTFLKGDKFQLQDVIEAQQFDRDTLSAIFEVAREMETIEKKSHGSQLLNGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDSIRTVEGYSDIIVMRHFESGAARRAAMTANIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNDVKIYFVSPEVVKMKEDIKEYLTLNGVEWEESKDLKEVASKCDVVYQTRIQKERFGERSDIYEEARGKYIIDTDVLGVMQKHAIVMHPLPRLDEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLVGW 387
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04964 387 Gene3D Aspartate-ornithine carbamoyltransferase 212 371 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 231 382 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 83 224 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 127 134 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 NCBIfam aspartate carbamoyltransferase 83 384 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Cich4g04964 387 Hamap Aspartate carbamoyltransferase [pyrB]. 81 386 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Cich4g04964 387 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 79 384 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 PRINTS Aspartate carbamoyltransferase signature 303 312 - -
Cich4g04964 387 PRINTS Aspartate carbamoyltransferase signature 157 166 - -
Cich4g04964 387 PRINTS Aspartate carbamoyltransferase signature 343 348 - -
Cich4g04964 387 PRINTS Aspartate carbamoyltransferase signature 117 139 - -
Cich4g04964 387 PRINTS Aspartate carbamoyltransferase signature 365 379 - -
Cich4g04964 387 PRINTS Aspartate carbamoyltransferase signature 211 228 - -
Cich4g04964 387 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 339 348 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 349 372 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 127 146 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 212 223 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cich4g04964 387 FunFam Aspartate carbamoyltransferase 83 215 - -
Cich4g04964 387 FunFam Aspartate carbamoyltransferase 2 216 371 - -
Cich4g04964 387 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 77 384 - -
Cich4g04964 387 Gene3D Aspartate-ornithine carbamoyltransferase 84 380 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04964 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:98394800 Cich4g04964 Cich-Chr4:140962908 dispersed
Cich Cich-Chr4:140962908 Cich9g01984 Cich-Chr9:42458807 dispersed
Cich Cich-Chr4:140962908 Cich9g00073 Cich-Chr9:2487507 wgd