AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04971 ATGGCCACACACACGCTTCTTCAGTTCGCCACCAACTTAACCCAGTTACCGTCTTCTTCATCCTCAATCTCCACAGGCTGTCCACTTTCTCCTTTCTTCTTAAAAGCATGTGATTCACCTAGGGCTCGGCGTCATCGCCGTTCCGCCGTATGCTGTTCTTTTACCTCAATGGAGTCTGCAAAGATTAAGGTCGTCGGTGTCGGCGGCGGAGGCAACAATGCCGTTAACCGCATGATTGGTAGCGGGTTGCAGGGTGTTGATTTTTACGCCATAAACACGGACTCCCAAGCGCTTCTGCAGTCGGTTGCAGAAAACCCAATTCAAATCGGAGAGCTTTTGACTCGTGGACTTGGTACGGGTGGGAATCCGCTGTTGGGGGAACAGGCTGCAGAGGAATCAAAAGAAGCAATTGGAAACGCGCTCAAGGGATCAGATCTTGTGTTCATAACAGCGGGAATGGGAGGTGGGACAGGGTCGGGTGCGGCGCCAGTAGTAGCCCAAATAGCAAAAGAAGCAGGATATCTGACAGTCGGTGTTGTCACGTACCCATTCAGCTTTGAAGGACGCAAAAGATCAGTCCAGGCATTAGAAGCTATTGAGAAGCTGCAAAAGAACGTCGACACACTTATCGTCATCCCAAATGACCGTTTACTGGATATTGCTGATGAACAGACACCCCTTCAGGACGCTTTTCTTCTTGCTGATGATGTTCTTCGCCAAGGTGTTCAGGGCATTTCTGATATTATCACAATACCTGGACTGGTAAATGTTGACTTTGCGGATGTGAAAGCAGTGATGAAAGACTCTGGAACTGCAATGCTTGGTGTGGGGGTTTCCTCAAGTAAAAACCGAGCTGAAGAAGCTGCTGAACAAGCAACACTTGCTCCTCTAATTGGGTCGTCCATCCAATCTGCTACCGGAGTGGTTTATAATATCACCGGAGGGAAGGACATAACTTTGCAAGAAGTCAATAGGGTGTCTCAGGTTGTAACAAGTCTGGCGGATCCTTCTGCAAACATTATATTTGGGGCTGTTGTGGATGAGAGATATAATGGGGAGATTCACGTGACTATTGTTGCTACTGGATTTGCACAATCCTTTCAGAAATCTCTTCTGGCTGACCCTAAAGGAGCAAAACTTGTTGATAGAAATCAAGAAACCTCGCAACCTTCCATCTCTCCTAAATCTTTCAGCACACAGAATCCCGCTCCCTCTCGACCTAGGAAAATCTTCTTTTGA 1239 47.62 MATHTLLQFATNLTQLPSSSSSISTGCPLSPFFLKACDSPRARRHRRSAVCCSFTSMESAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSVAENPIQIGELLTRGLGTGGNPLLGEQAAEESKEAIGNALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSVQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIVATGFAQSFQKSLLADPKGAKLVDRNQETSQPSISPKSFSTQNPAPSRPRKIFF 412
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04971 412 ProSitePatterns FtsZ protein signature 1. 92 126 IPR020805 GO:0005525(InterPro)
Cich4g04971 412 Hamap Cell division protein FtsZ [ftsZ]. 57 388 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Cich4g04971 412 MobiDBLite consensus disorder prediction 378 412 - -
Cich4g04971 412 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 42 389 IPR045061 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Cich4g04971 412 Pfam Tubulin-FtsZ family, GTPase domain 61 221 IPR003008 GO:0005525(InterPro)
Cich4g04971 412 SMART Tubulin-C-4 255 372 IPR018316 -
Cich4g04971 412 FunFam Cell division protein FtsZ 1, chloroplastic 226 363 - -
Cich4g04971 412 SUPERFAMILY Tubulin C-terminal domain-like 255 369 IPR008280 -
Cich4g04971 412 SUPERFAMILY Tubulin nucleotide-binding domain-like 60 256 IPR036525 -
Cich4g04971 412 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 154 160 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cich4g04971 412 MobiDBLite consensus disorder prediction 382 405 - -
Cich4g04971 412 NCBIfam cell division protein FtsZ 55 371 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Cich4g04971 412 Gene3D Tubulin-FtsZ, GTPase domain 52 268 IPR036525 -
Cich4g04971 412 Gene3D - 269 374 IPR037103 -
Cich4g04971 412 CDD FtsZ-type1 77 362 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Cich4g04971 412 SMART Tubulin-4 61 253 IPR003008 GO:0005525(InterPro)
Cich4g04971 412 FunFam Cell division protein FtsZ 1, chloroplastic 54 268 - -
Cich4g04971 412 Pfam FtsZ family, C-terminal domain 270 363 IPR024757 -
Cich4g04971 412 ProSitePatterns FtsZ protein signature 2. 145 166 IPR020805 GO:0005525(InterPro)
Cich4g04971 412 PRINTS Cell division protein FtsZ signature 260 281 IPR003008 GO:0005525(InterPro)
Cich4g04971 412 PRINTS Cell division protein FtsZ signature 174 195 IPR003008 GO:0005525(InterPro)
Cich4g04971 412 PRINTS Cell division protein FtsZ signature 146 166 IPR003008 GO:0005525(InterPro)
Cich4g04971 412 PRINTS Cell division protein FtsZ signature 237 259 IPR003008 GO:0005525(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04971 K03531 cell division protein FtsZ
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:13079331 Cich4g04971 Cich-Chr4:141196561 dispersed
Cich Cich-Chr4:141196561 Cich9g01023 Cich-Chr9:21482254 dispersed