AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04976 ATGAACACCAAATCCCTAAAACTCCTCGTCTTTCTCTTCATCCTCAATTCTATCACCCTTTACCTCTACTTCTCTTCTCACCCCGATTACTTCCGCCGCCACCGTACAACGCAAGACACTCCTCATTCCTTACCACAATTCCACTCTTCCTTTTCCGATCGTACCCATCTTGTATCTTTGTCTAATTCCAATAAACCATGGCCCATCCTGCCTTCTTACCTCCCTTGGTCTTTAACCCCTAACACCCCTTTTAGATCCTGTGAAGCCTATTTTGGTAATGGATTCACTCGTCGTGTCGATCTGCTCAAACCCTCGCCTCAGATTAACCGTAAAGTGAGTAATGGTGGAGGAGGATGGTTCAGGTGCTTTTACAGTCAGACCTTGCGGAGTTCCATATGCGAGGGCGGGAAGATGCGGATGCATCCTGACAAGATTAAGATGTCGACTGGTGGGGAGGTATTGGAGAGTGTGATTGGCAGGGGCGAGGAGGAAGAGTTGCCGGAGTTTGAATTCGGAGCGTTTGATCTGGAGGTTGGTGAGAAATCCAAGAGTGATGGTAAGAAGCTTGCTAGTGAGGATTTTTTGAACGAGTATATGCAGAAAGGGGAGATCTCAAGACATACCATGCGGGACTTGATCGATTCAATTCAGTTAGTTGGCGCCAATGAATTTGAGTGCTCTGAGTGGATTGAGGAGCCAACACTTTTGATAACAAGGTTTGAGTATGCAAACATGTTTCACACAGTCACAGACTGGTACAGTGCATACGTGTCTTCCAGGGTTACAGGCCTGCCAAACCGACCTCAATTAGTCTTCGTAGACGGACACTGCATGACACAATTGGAAGAAACATGGAAAGCTGTGTTCTCGGGACTAAGATATGCTAAAAATTTCAGTGGTCCGGTTTGCTTTCGTCATGCTATTCTGTCACCTTTAGGGTACGAAACCGCAATGTTCAAGGGTCTGTCTGAAAACATCGATTGTTATGGAGCTTATGCCCATGATCTATGGCAGAAGCCAGATGACAAAAAAACAGCCAGAATCTCAGAATTTGGGGAGATGATAAGAGCTGCTTTTGCACTTCCTTTACACAAACAACAACACAGCTCAAAATCAGGGTATAATGTTTTGTTTGTGAGGCGTGAGGATTACCTGGCGCATCCACGCCATGGTGGCAAGGTTCAGTCGAGACTCAGTAACGAACAACAAGTGTTTGATGCGATCAAGAATTGGTCATTGAGTCATGCAGAATGTAAAATAAATGTAGTTAATGGATTGTTTGGACACATGGCGATGAAAGAGCAGGTGAGAGCCATTCAAGATGCGTCTGTTATTGTGGGTGCTCATGGGGCAGGGCTGACTCACATCGTATCAGCATCACCAGAAGCAGAAATTTTAGAGATGGTTGCGAGTGAGTTCAGGAGGCCTCATTTTGCACTCATTTCTCAGTGGAGAGGGCTTAATTACCACCCCATATATCTGAGTGGCTCCCATGCTACTCCGTCACTTGTTATTCACAAGCTCCGTGGCATTTTCAAGACTTTAGGATGCTGA 1554 45.75 MNTKSLKLLVFLFILNSITLYLYFSSHPDYFRRHRTTQDTPHSLPQFHSSFSDRTHLVSLSNSNKPWPILPSYLPWSLTPNTPFRSCEAYFGNGFTRRVDLLKPSPQINRKVSNGGGGWFRCFYSQTLRSSICEGGKMRMHPDKIKMSTGGEVLESVIGRGEEEELPEFEFGAFDLEVGEKSKSDGKKLASEDFLNEYMQKGEISRHTMRDLIDSIQLVGANEFECSEWIEEPTLLITRFEYANMFHTVTDWYSAYVSSRVTGLPNRPQLVFVDGHCMTQLEETWKAVFSGLRYAKNFSGPVCFRHAILSPLGYETAMFKGLSENIDCYGAYAHDLWQKPDDKKTARISEFGEMIRAAFALPLHKQQHSSKSGYNVLFVRREDYLAHPRHGGKVQSRLSNEQQVFDAIKNWSLSHAECKINVVNGLFGHMAMKEQVRAIQDASVIVGAHGAGLTHIVSASPEAEILEMVASEFRRPHFALISQWRGLNYHPIYLSGSHATPSLVIHKLRGIFKTLGC 517
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04976 517 PANTHER PUTATIVE-RELATED 10 517 IPR007657 GO:0016757(InterPro)
Cich4g04976 517 Pfam Glycosyltransferase 61 354 465 IPR049625 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04976 K03714 glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:141360352 Cich9g00051 Cich-Chr9:2216599 wgd