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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich8g01666 ATGGAAATGCAAAACGACTTCGATCGCCTTCTCTTCTTTGAGCATGCTCGCCGGAGTGCCGAAGTGACTTACGCGAAAAATCCTCTCGATACCGAGAACCTAACCAGATGGGGAGGGGCGTTGCTCGAATTGTCGACCTTCCAGAGTGTTCAGGAATCAAAATCCATGATTAAAGATGCTATATCAAAATTGGATGAAGCATTATCAATCGATCCAAGGAAACATGACGCCTTGTGGTGTATGGGCAATGCACAAACTTCTTACGCTTTTCTGACTCCCGATAAAGATGTAGCCAAGGGCTATTTTGACTCGGCGTATACTTACTTTCAGCAGGCTCTCGAAGAGGATCCAGGGAATGAACTTTACCGCAAATCATTTGAAGTTGCTGTAAAGGCTCCTGAATTACACTCAGATCTTCATAAACAAGCTTCTAGTCAACAAGCCATGGCATCAGGGTCAATAGGAGGTCCTTCAACTTCTTCAAGTGTCAGGGGTCCAAAAGCGCAAAAGAGTAGTGATTTGAAATATGATATATTTGGATGGGTTATTCTTGCGGTTACTATTGTGGCTTGGGTTGGATTTGCTAAATCAAATGTACCTTCACAACCGCCTCGATAA 618 43.69 MEMQNDFDRLLFFEHARRSAEVTYAKNPLDTENLTRWGGALLELSTFQSVQESKSMIKDAISKLDEALSIDPRKHDALWCMGNAQTSYAFLTPDKDVAKGYFDSAYTYFQQALEEDPGNELYRKSFEVAVKAPELHSDLHKQASSQQAMASGSIGGPSTSSSVRGPKAQKSSDLKYDIFGWVILAVTIVAWVGFAKSNVPSQPPR 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich8g01666 205 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 196 - -
Cich8g01666 205 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515(InterPro)
Cich8g01666 205 MobiDBLite consensus disorder prediction 140 168 - -
Cich8g01666 205 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 204 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Cich8g01666 205 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich8g01666 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:1317997 Cich8g01666 Cich-Chr8:55306082 dispersed
Cich Cich-Chr3:44231648 Cich8g01666 Cich-Chr8:55306082 dispersed
Cich Cich-Chr6:24740182 Cich8g01666 Cich-Chr8:55306082 dispersed
Cich Cich-Chr7:78850022 Cich8g01666 Cich-Chr8:55306082 dispersed
Cich Cich-Chr7:104547959 Cich8g01666 Cich-Chr8:55306082 dispersed
Cich Cich-Chr8:55306082 Cich8g00294 Cich-Chr8:7361987 transposed