AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cich8g01671 | ATGTCGGAGGCATCTGATTTGGCACTAAATGCCACTGGGCCGCTAGTGTGGCATAACCCAAGCGGCATCCCCATACAGCATGTTTTTGCTGCTGTTCAAAGCAATCTACATCCTGAATTCATCACAAAAAGCCCATTTTCATCAAACAGATCTTCATCACCCGATATCGGAAATCGGAAAAACAAGAACACCAACATCCAAATTCCCTCTGGATTTACAAAAATGGTTCGGGTCAAGGATTTGATCCTCACTTTCTTCAACAACAGATGGCTTGTTTTCGTCGCGGCAATGTGGATTCAATCGTGCGCCGGCATCGGGTACTTGTTCGGAAGCATATCGCCGGTGATAAAGAGTTCACTGAACTATAATCAGAAGCAGGTTGCGAGGTTGGGGGTAGCTAAGGATCTCGGTGACAGTGTTGGGTTTTTGGCCGGAAGTATGTCGGAGATACTGCCGTTGTGGGCCCTGTTGCTCGTTGGTGCTATTCAGAACTTTGTTGGGTATGGTTGGGTCTGGCTCGTCGTCACCGGTAAAGCTCCGGTGCTGCCATTGTGGGTGATGTGCCTTCTGATATTCATCGGAACAAATGGCGAAACCTACTTCAACACAGTCGCATTAGTTTCATGTGTTCAAAACTTCCCCAAAAGCCGTGGGCCAGTCGTCGGAATACTAAAGGGATTCGCCGGTCTCGGCGGTGCGATCTTAACCCAGATATACGCCTTATTCAAATCCCCTGATAACGCATCGCTTATATTCATGGTCGCCGTCGGTCCTTCCATGGTCGTCATCGCTCTCATGTTCATCGTCAGACCAGTCGGAGGTCACAGACAACTCCGATTATCAGACGCATCAAGTTTCTCGTTCATCTACTGCGTCTGTCTCATCCTCGCCGCTTATTTAATGGGAGTTATGCTCGTCGAAGATTTATTCGATCTCAGCCAAACCATCGTCCAAATTTTCACCGCGATTCTATTCATCCTCTTAGTACTCCCCGTCGGAATTCCATTATGGTTAACTTTCTCTTCAGATCCCAAAAACCCCAACGAAGAATCTCTCCTACCCGAATCACAAAACAAAGAACCCGAAATATCAGAACACGATCCAAACGAGATCATATTCAGTGAATTAGAAGATGAAAAACCCAGAGACGTCGATCTCCTTCCGGCGTCAGAACGGCAAAAGAGAATCCTGCAACTGCAATCGAAGCTTGCTCAGGCGGCGGCGGAAGGGGCGGTGAGGATTAAGAGAAGAAGAGGCCCACATCGAGGTGAAGATTTTGACCTTACACAAGCATTGATCAAGGCTGATTTTTGGCTCATTTTTTGGTCGCTTTTATTGGGATCTGGTTCCGGTTTGACTGTGATCGATAATTTAGGGCAGATGACTGAATCTTTAGGGTATGATAATGCGCATATTTTTGTTTCCATGATCAGTATTTGGAACTTTTTGGGCCGTGTCGGCGGTGGCTATTTCTCCGAGATCATTGTCCGGGACTACGCTTACCCACGCCCCGTAGCCATGGCAGTTGCCCAGGGTTTTATGGCAATTGGGCATTTATTCTTCGCCATGGGTTGGCCCGGTGCAATGTACATCGGCACCCTTTTGATCGGGCTAGGGTACGGGGCCCATTGGGCCATCGTACCCGCTACAGCCTCTGAATTATTTGGACTCAAAAAATTCGGAGCGCTGTACAATTTTCTCACACTAGCGAACCCTGCAGGTTCGCTAGTGTTCTCAGGCGTCATTGCCAGCTACATTTACGACTCTGAAGCCGAAAAGCAAGCGCAACAACGCCATCAACCAATTACCATGTCTACGTCCTCTTTTTTTACCAAACTTTTTGACACGGATGACGCTCTCAAGTGTGAAGGCTCAGTGTGCTTCTTTTTGACATTTATGATAATGTCGGGACTTTGTATTATCGCGCTTATCTTAAGTTTGATACTTGTGCGTCGAACTAAAGTCGTCTACCAGAACCTCTACGGGAGAACCCGATCTTAA | 2001 | 47.38 | MSEASDLALNATGPLVWHNPSGIPIQHVFAAVQSNLHPEFITKSPFSSNRSSSPDIGNRKNKNTNIQIPSGFTKMVRVKDLILTFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSMSEILPLWALLLVGAIQNFVGYGWVWLVVTGKAPVLPLWVMCLLIFIGTNGETYFNTVALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQIYALFKSPDNASLIFMVAVGPSMVVIALMFIVRPVGGHRQLRLSDASSFSFIYCVCLILAAYLMGVMLVEDLFDLSQTIVQIFTAILFILLVLPVGIPLWLTFSSDPKNPNEESLLPESQNKEPEISEHDPNEIIFSELEDEKPRDVDLLPASERQKRILQLQSKLAQAAAEGAVRIKRRRGPHRGEDFDLTQALIKADFWLIFWSLLLGSGSGLTVIDNLGQMTESLGYDNAHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQGFMAIGHLFFAMGWPGAMYIGTLLIGLGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGVIASYIYDSEAEKQAQQRHQPITMSTSSFFTKLFDTDDALKCEGSVCFFLTFMIMSGLCIIALILSLILVRRTKVVYQNLYGRTRS | 666 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cich8g01671 | 666 | Pfam | Nodulin-like | 89 | 335 | IPR010658 | - | |
| Cich8g01671 | 666 | SUPERFAMILY | MFS general substrate transporter | 284 | 655 | IPR036259 | - | |
| Cich8g01671 | 666 | SUPERFAMILY | MFS general substrate transporter | 76 | 276 | IPR036259 | - | |
| Cich8g01671 | 666 | MobiDBLite | consensus disorder prediction | 43 | 64 | - | - | |
| Cich8g01671 | 666 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 88 | 658 | - | GO:0016020(PANTHER) | |
| Cich8g01671 | 666 | FunFam | Nodulin family protein | 428 | 659 | - | - | |
| Cich8g01671 | 666 | Gene3D | MFS general substrate transporter like domains | 380 | 610 | IPR036259 | - | |
| Cich8g01671 | 666 | Coils | Coil | 389 | 409 | - | - | |
| Cich8g01671 | 666 | CDD | MFS-Mch1p-like | 89 | 637 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cich8g01671 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cich | Cich-Chr3:52365708 | Cich8g01671 | Cich-Chr8:55462112 | dispersed | |
| Cich | Cich-Chr5:16585514 | Cich8g01671 | Cich-Chr8:55462112 | dispersed | |
| Cich | Cich-Chr6:104652786 | Cich8g01671 | Cich-Chr8:55462112 | dispersed | |
| Cich | Cich-Chr2:116288271 | Cich8g01671 | Cich-Chr8:55462112 | transposed | |
| Cich | Cich-Chr6:26482985 | Cich8g01671 | Cich-Chr8:55462112 | transposed | |
| Cich | Cich-Chr3:156324708 | Cich8g01671 | Cich-Chr8:55462112 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cich9g00919 | . | 4 | 354 | Nodulin-like gene family | AT5G64700 | 46.875 | 1.05e-94 | 285.0 | |
| Cich9g01247 | . | 21 | 364 | Nodulin-like gene family | AT5G47470 | 53.782 | 2.13e-127 | 368.0 | |
| Cich9g01855 | . | 6 | 572 | Nodulin-like gene family | AT4G19450 | 49.655 | 1.81e-164 | 478.0 | |
| Cich8g01030 | . | 11 | 191 | Nodulin-like gene family | AT3G43660 | 41.41 | 2.39e-51 | 164.0 | |
| Cich8g01671 | . | 6 | 579 | Nodulin-like gene family | AT5G14120 | 71.743 | 0.0 | 857.0 | |
| Cich7g02072 | . | 6 | 559 | Nodulin-like gene family | AT4G19450 | 49.561 | 8.96e-166 | 481.0 | |
| Cich7g02086 | . | 195 | 235 | Nodulin-like gene family | AT3G45870 | 58.537 | 1.60e-07 | 46.6 | |
| Cich7g02838 | . | 9 | 345 | Nodulin-like gene family | AT3G30340 | 48.424 | 6.04e-120 | 350.0 | |
| Cich6g00805 | ACH | 7 | 334 | Nodulin-like gene family | AT2G39510 | 55.623 | 3.68e-133 | 384.0 | |
| Cich6g00975 | . | 6 | 564 | Nodulin-like gene family | AT2G28120 | 59.72 | 0.0 | 682.0 | |
| Cich6g01108 | . | 35 | 69 | Nodulin-like gene family | AT1G80530 | 60.0 | 5.18e-06 | 43.9 | |
| Cich6g01576 | ACH | 2 | 559 | Nodulin-like gene family | AT2G28120 | 70.87 | 0.0 | 807.0 | |
| Cich6g01845 | . | 161 | 200 | Nodulin-like gene family | AT5G50630 | 52.5 | 1.09e-07 | 46.2 | |
| Cich6g03658 | . | 7 | 565 | Nodulin-like gene family | AT2G39210 | 66.192 | 0.0 | 769.0 | |
| Cich5g00144 | . | 12 | 198 | Nodulin-like gene family | AT3G43660 | 70.681 | 8.14e-96 | 275.0 | |
| Cich5g00927 | ACH | 6 | 579 | Nodulin-like gene family | AT5G14120 | 60.417 | 0.0 | 721.0 | |
| Cich5g01743 | . | 1 | 565 | Nodulin-like gene family | AT2G39210 | 66.375 | 0.0 | 766.0 | |
| Cich5g01744 | . | 7 | 565 | Nodulin-like gene family | AT2G39210 | 67.611 | 0.0 | 770.0 | |
| Cich5g01898 | ACH | 8 | 373 | Nodulin-like gene family | AT2G37460 | 62.834 | 2.26e-171 | 481.0 | |
| Cich5g02017 | . | 43 | 119 | Nodulin-like gene family | AT2G34350 | 37.037 | 2.35e-06 | 42.7 | |
| Cich5g02163 | ACH | 4 | 559 | Nodulin-like gene family | AT2G28120 | 66.25 | 0.0 | 759.0 | |
| Cich5g02734 | . | 220 | 299 | Nodulin-like gene family | AT2G39510 | 45.652 | 6.59e-17 | 77.8 | |
| Cich5g03251 | . | 200 | 299 | Nodulin-like gene family | AT2G39510 | 42.056 | 1.43e-17 | 77.0 | |
| Cich4g01112 | ACH | 13 | 365 | Nodulin-like gene family | AT5G40230 | 44.068 | 3.14e-95 | 286.0 | |
| Cich4g02125 | . | 1 | 740 | Nodulin-like gene family | AT4G19180 | 56.697 | 0.0 | 821.0 | |
| Cich4g02836 | . | 1 | 358 | Nodulin-like gene family | AT1G09380 | 50.559 | 1.96e-128 | 370.0 | |
| Cich4g03674 | ACH | 17 | 194 | Nodulin-like gene family | AT3G43660 | 69.101 | 1.68e-90 | 262.0 | |
| Cich4g03675 | ACH | 1 | 195 | Nodulin-like gene family | AT3G43660 | 63.81 | 2.47e-95 | 275.0 | |
| Cich3g00594 | . | 2 | 193 | Nodulin-like gene family | AT3G43660 | 26.337 | 8.85e-08 | 49.3 | |
| Cich3g01949 | . | 3 | 351 | Nodulin-like gene family | AT1G21890 | 59.026 | 9.83e-154 | 437.0 | |
| Cich3g02413 | . | 108 | 561 | Nodulin-like gene family | AT4G19180 | 37.229 | 4.40e-90 | 290.0 | |
| Cich3g02559 | ACH | 7 | 579 | Nodulin-like gene family | AT5G14120 | 60.558 | 0.0 | 695.0 | |
| Cich3g02567 | . | 160 | 205 | Nodulin-like gene family | AT5G45370 | 46.377 | 2.10e-14 | 70.1 | |
| Cich3g02789 | . | 5 | 111 | Nodulin-like gene family | AT1G80530 | 60.748 | 1.24e-41 | 142.0 | |
| Cich3g02790 | ACH | 5 | 561 | Nodulin-like gene family | AT1G80530 | 60.25 | 0.0 | 676.0 | |
| Cich3g03329 | . | 4 | 529 | Nodulin-like gene family | AT1G74780 | 54.459 | 0.0 | 543.0 | |
| Cich3g03331 | . | 5 | 529 | Nodulin-like gene family | AT1G74780 | 57.605 | 0.0 | 586.0 | |
| Cich3g03332 | . | 187 | 529 | Nodulin-like gene family | AT1G74780 | 52.77 | 5.36e-113 | 336.0 | |
| Cich3g03333 | . | 187 | 529 | Nodulin-like gene family | AT1G74780 | 52.77 | 5.36e-113 | 336.0 | |
| Cich3g03334 | . | 187 | 529 | Nodulin-like gene family | AT1G74780 | 52.77 | 5.36e-113 | 336.0 | |
| Cich3g03335 | . | 5 | 121 | Nodulin-like gene family | AT1G74780 | 61.538 | 1.85e-39 | 136.0 | |
| Cich3g03336 | . | 5 | 532 | Nodulin-like gene family | AT1G74780 | 59.434 | 0.0 | 613.0 | |
| Cich3g03653 | . | 15 | 389 | Nodulin-like gene family | AT1G75500 | 73.6 | 0.0 | 563.0 | |
| Cich3g03838 | . | 30 | 70 | Nodulin-like gene family | AT5G07050 | 48.78 | 6.22e-08 | 45.4 | |
| Cich3g05394 | . | 6 | 578 | Nodulin-like gene family | AT5G14120 | 71.552 | 0.0 | 823.0 | |
| Cich2g00003 | ACH | 19 | 263 | Nodulin-like gene family | AT2G37460 | 56.452 | 3.59e-102 | 300.0 | |
| Cich2g02297 | . | 121 | 353 | Nodulin-like gene family | AT5G64700 | 39.271 | 5.13e-56 | 181.0 | |
| Cich2g02989 | . | 16 | 562 | Nodulin-like gene family | AT4G34950 | 68.897 | 0.0 | 784.0 | |
| Cich2g03276 | . | 78 | 321 | Nodulin-like gene family | AT3G53210 | 25.769 | 3.47e-06 | 47.0 | |
| Cich2g04595 | ACH | 16 | 363 | Nodulin-like gene family | AT5G40240 | 48.87 | 1.21e-110 | 325.0 | |
| Cich1g00430 | . | 1 | 87 | Nodulin-like gene family | AT2G34350 | 54.348 | 1.98e-21 | 84.7 | |
| Cich1g00700 | . | 12 | 390 | Nodulin-like gene family | AT5G07050 | 66.582 | 0.0 | 512.0 | |
| Cich1g01313 | ACH | 5 | 198 | Nodulin-like gene family | AT3G43660 | 67.337 | 3.69e-92 | 266.0 | |
| Cich1g01317 | ACH | 1 | 198 | Nodulin-like gene family | AT3G43660 | 65.728 | 1.34e-96 | 278.0 | |
| Cich1g01318 | . | 1 | 97 | Nodulin-like gene family | AT3G43630 | 46.729 | 2.33e-23 | 87.8 | |
| Cich1g01319 | . | 2 | 198 | Nodulin-like gene family | AT3G43660 | 68.317 | 3.69e-96 | 276.0 | |
| Cich1g01320 | . | 1 | 97 | Nodulin-like gene family | AT3G43630 | 55.14 | 2.66e-30 | 105.0 | |
| Cich1g01321 | . | 2 | 198 | Nodulin-like gene family | AT3G43660 | 66.667 | 7.39e-93 | 268.0 | |
| Cich1g01323 | . | 3 | 198 | Nodulin-like gene family | AT3G43660 | 58.333 | 5.67e-76 | 226.0 | |
| Cich1g01324 | . | 3 | 198 | Nodulin-like gene family | AT3G43660 | 55.45 | 8.18e-78 | 231.0 | |
| Cich1g01325 | ACH | 2 | 198 | Nodulin-like gene family | AT3G43660 | 64.356 | 2.50e-91 | 264.0 | |
| Cich1g01326 | ACH | 2 | 198 | Nodulin-like gene family | AT3G43660 | 65.842 | 2.08e-92 | 267.0 | |
| Cich1g01873 | . | 131 | 213 | Nodulin-like gene family | AT5G45370 | 48.113 | 5.64e-28 | 103.0 | |
| Cich1g04006 | ACH | 8 | 357 | Nodulin-like gene family | AT2G37460 | 63.068 | 1.46e-165 | 466.0 | |
| Cich1g05206 | . | 10 | 350 | Nodulin-like gene family | AT5G45370 | 61.538 | 1.53e-155 | 440.0 | |
| Cich1g05207 | . | 10 | 350 | Nodulin-like gene family | AT5G45370 | 65.014 | 1.05e-168 | 473.0 | |
| Cich1g05228 | . | 1 | 566 | Nodulin-like gene family | AT4G19450 | 62.676 | 0.0 | 659.0 |