AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich8g01704 ATGACCATAAACCTCTCTTTCACCCCTTATCGGACGAATTCGCCGCTCGTTCACCATCACAACTCTTTTCCCTTTAATCAGTTTAATTATCTTTCAAAAGTTTCCTTACCGTTATTAGCTACAATGGGCGGTACATTCAATCCACAAATTTTGGTGGAAAAGCTTGCGAAACTCAATAGTTCACAACAAAGCATCGAGACTCTGTCACACTGGTGTATATTTCATATGAACAAAGCAAAACAAGTTGTGGAAACATGGGCACGACAATTTCGATGTTCCCCACGTGATCAACGTTTGGCTTTTCTTTATCTTGCAAATGATATTCTGCAAAATAGTAGGCGAAAAGGTTCCGAGTTTGTTGGAGAGTTCTGGAAGGTTCTTCCGGATGCACTCCATGATGTGATGGATAATACGGATGATTCCGGAAGAAACGCGGCTTTACGACTGGTCAAGATTTGGGAGGAAAGAAAAGTTTTTGGGTCACGGGGGCAGATTCTTAAAGAAGAACTTGTGGGAAGGCACGTAGGAAATAGTAACAAAAATGAGAAACCCTCAGGGGTAAAATCGCAACAACTTGCTGGAAATTCATTAGAGAAGATAATATCAGGGTATCAAATTATAAATGGTGGTCAACTTGATGAAGATGCTATGATTAATAAATGCAAAAACACAATTAGCTGCATTGAAAAAGTGGAGAAGAAATTTGGTGGTGATATTAAATCTGTGAATGGGTTGGGTATTGTGGAAGAACTCAAGGGGCATCAAACTACATTGAAAGATTGTATTGAGCAACTTTCAGTTGTAGAATCATCAAGAACTAATCTCGTTTGTTATTTGCGTGAGGCTTTACAAGAACAGGAAATGAAGCTGGATAAAGTCCGAAATGAACTTAAGGCTGCTCATAATCAATCAGAAAAAACCGACAATTTATGCCGCCAGTTGATAAACCCCGGTGCCACCAAATTACTCCCGGAGCCGACCACAACCACAACCACCACCCAACTCCACAATTACATTCCCGGAACCCGAGAACAGTCTGCACCGGTAATGTACACCCAACAAATTCCAATCACTGAGGAGGAAGCCACCAAATCTGCCGCCGCCCAAGTGGCGGCAAAGCTCACCGCCTCCACATCATCCGCCGAGATGCTCTCCTACGTCCTCTCTTCCCTAGCATCCGAGGGCATTATCGGAAATTCCGCTAAAGAATCATCCTCAACCAACCCTGAAAAAAGAGCCAAGATCGAGAAAAGCGACCACCACCACCAACCACCGCTGCCGTCATCTCCGCCACCTCTACAGCCGCTGCCGCCAATGCAAGCGTATCCACTGCCGCCGTTCATGGCGGCAGTACCGTATAGCTATAACCAGCAACCGCCGCCGCCGCCTCTTTTGGGGTATCCCGCTGTTGTGCCACTGGTGAACAGTGGTTCTTCTTATACTCCGGTGGTTGTGCCGCCACCGGGCGGTTACCAGAGTTATCAAATGGAAGGTGGGTTTACTAGCCAACCGATGGCACCTATGTCTAGACAGTAG 1536 45.51 MTINLSFTPYRTNSPLVHHHNSFPFNQFNYLSKVSLPLLATMGGTFNPQILVEKLAKLNSSQQSIETLSHWCIFHMNKAKQVVETWARQFRCSPRDQRLAFLYLANDILQNSRRKGSEFVGEFWKVLPDALHDVMDNTDDSGRNAALRLVKIWEERKVFGSRGQILKEELVGRHVGNSNKNEKPSGVKSQQLAGNSLEKIISGYQIINGGQLDEDAMINKCKNTISCIEKVEKKFGGDIKSVNGLGIVEELKGHQTTLKDCIEQLSVVESSRTNLVCYLREALQEQEMKLDKVRNELKAAHNQSEKTDNLCRQLINPGATKLLPEPTTTTTTTQLHNYIPGTREQSAPVMYTQQIPITEEEATKSAAAQVAAKLTASTSSAEMLSYVLSSLASEGIIGNSAKESSSTNPEKRAKIEKSDHHHQPPLPSSPPPLQPLPPMQAYPLPPFMAAVPYSYNQQPPPPPLLGYPAVVPLVNSGSSYTPVVVPPPGGYQSYQMEGGFTSQPMAPMSRQ 511
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich8g01704 511 MobiDBLite consensus disorder prediction 407 423 - -
Cich8g01704 511 ProSiteProfiles CID domain profile. 43 175 IPR006569 -
Cich8g01704 511 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 43 500 - GO:0000993(PANTHER)|GO:0031124(PANTHER)
Cich8g01704 511 MobiDBLite consensus disorder prediction 399 440 - -
Cich8g01704 511 Gene3D - 43 171 IPR008942 -
Cich8g01704 511 MobiDBLite consensus disorder prediction 424 440 - -
Cich8g01704 511 Coils Coil 280 310 - -
Cich8g01704 511 FunFam ENTH-VHS family protein isoform 1 43 171 - -
Cich8g01704 511 Pfam CID domain 50 161 IPR006569 -
Cich8g01704 511 CDD CID-RPRD-like 48 170 - -
Cich8g01704 511 SMART 558neu5 50 171 IPR006569 -
Cich8g01704 511 SUPERFAMILY ENTH-VHS domain 53 158 IPR008942 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich8g01704 K15559 regulator of Ty1 transposition protein 103
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Event-related genes

Select Gene_1 Gene_2 Event_name
63405 Cich6g01690 Cich8g01704
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr8:56903644 Cich9g02942 Cich-Chr9:88387766 dispersed
Cich Cich-Chr4:20561359 Cich8g01704 Cich-Chr8:56903644 transposed
Cich Cich-Chr6:24522932 Cich8g01704 Cich-Chr8:56903644 wgd