AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich8g01712 ATGAAGTCGTCACTGGGGAAGCTCGGGCGGAAATTATCGTTACAGAAGAGCGATGTGAGGGAGATGAGGGATCATCAGCCTTCCGCCCATATAGATGAGCTTGCTCAGGCTTCCAAGGATATGCAAGATATGAGAAACTGCTATGATGGTTTATTATCTGCAGCAGCTGCAACAGCAAATAGTATATACGAATTTTCGGAGTCACTAAATGAAATGGGAAGCTGTTTACTGGGGACAACCGGTGCAGATCCTGATGGTGAAAGTGGAAAAATGCTATCGACTTTAGGTGATATGCAATTGGAACTTCAGAAAATTGCTGATACTTATCGATCTGATGTGGTTGTGACAATTACAAATCCATCAGAGTCTCTCCTTAGTGAGTTAAGGAAAGTGGAGGAGATGAAACTTCAATGTGATGAAAAAAGGGAGGTTTACGAATACATGATGGCACAACATAAGGAAAAAGGGAAATTGAGAAATGGAAAAGTTGAACAAAAACTAAAAGAAGCTCAAGAGGAATTCGATGAAGTTACAAGGCTTTGTGTTTTTAGAGTGAAATCACTTAAAGAAGGACAATGTCGTAGTCTTTTAACACAAGCTGCTCGCCATCATGCTGCACAGTTGAATTTCTTTCGGAAGGGATTGAAAGTTCTAGAAGCAGTAGAACCTTCCATAAGAAACGTTGCGGAAAAACATCGAATCGATTACCAAATCACAGGAGGTGAACCGATGAGTGGCTATGAAAGCACCGATGATGGAGAATTAAGTTTTGATTATAATAAACAAAAAAAACACGTGTTTGATGATGATGATGGAAGTTCACCAAATCCAATGGAGCTGGACCAAGTCGATGTTCCGTATTTAGAAGATTCAGAGATGAATCGGAACAAACAAAAAGGGGAGCAGATTTACGCAAGGCAACCAAGAGGAAGCAGCTATTCCGCCCCGCTATTCCCGGAAAAAATCGACAAATCCGATAAACAAAAAGGAACACAACCACCGCGTAAATTTTACTCTTATGTCCTCCCGCCTCCCATTATCGACACCCGGAATCCAATTTCAAAACCCTCCATTTCTCATTCCATTCCATTCCAACCAATTCCACTCGACACCGATTCCACTCCCGCCACCCAACTCCCCGCCCCATCCACCGCAAGATTCTCTGCCTCACAACAAGACAATCCTATTCCGGTCCACTACCCCGAGGGCAAAATAGTCAAACGACAATCCTATTCCGGTCCACTACCACCAAGCAAACAATCCTCTTTCAAAATCGCGTCCGCTAGTGGCCCGATTACCTCCGAGCTTCCGCAACCGCCATCGCGGATTCCGGTGTCGCAACCGTCGCGTAGCGCTTCACCGCCACCGATATCTTCGCCGAAAATAAGCGAGCTTCACGAGCTTCCGAGACCGCCTTCTAATTTACCGTTTTCAAAGTCCGTTGCTATTTCCGGTAATACGAATACGAATCGACATTCCGCTCCGTTGTATTCCAAGAATCAAGAAATCTCGCCGCCAAATAAACGCGCGATGCTAACGTCGATTTCCGCGTCTCCGCTTCCGCTTCCGCCCTCGGTTGTTCCTCGAAGCTTTTCCATACCCTCGAAGGGAAATGACGTTAATACCCTCGGGTAG 1635 45.14 MKSSLGKLGRKLSLQKSDVREMRDHQPSAHIDELAQASKDMQDMRNCYDGLLSAAAATANSIYEFSESLNEMGSCLLGTTGADPDGESGKMLSTLGDMQLELQKIADTYRSDVVVTITNPSESLLSELRKVEEMKLQCDEKREVYEYMMAQHKEKGKLRNGKVEQKLKEAQEEFDEVTRLCVFRVKSLKEGQCRSLLTQAARHHAAQLNFFRKGLKVLEAVEPSIRNVAEKHRIDYQITGGEPMSGYESTDDGELSFDYNKQKKHVFDDDDGSSPNPMELDQVDVPYLEDSEMNRNKQKGEQIYARQPRGSSYSAPLFPEKIDKSDKQKGTQPPRKFYSYVLPPPIIDTRNPISKPSISHSIPFQPIPLDTDSTPATQLPAPSTARFSASQQDNPIPVHYPEGKIVKRQSYSGPLPPSKQSSFKIASASGPITSELPQPPSRIPVSQPSRSASPPPISSPKISELHELPRPPSNLPFSKSVAISGNTNTNRHSAPLYSKNQEISPPNKRAMLTSISASPLPLPPSVVPRSFSIPSKGNDVNTLG 544
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich8g01712 544 MobiDBLite consensus disorder prediction 13 28 - -
Cich8g01712 544 MobiDBLite consensus disorder prediction 477 520 - -
Cich8g01712 544 MobiDBLite consensus disorder prediction 352 395 - -
Cich8g01712 544 MobiDBLite consensus disorder prediction 430 544 - -
Cich8g01712 544 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 359 IPR037488 -
Cich8g01712 544 MobiDBLite consensus disorder prediction 293 399 - -
Cich8g01712 544 SUPERFAMILY BAR-IMD domain-like 32 226 IPR027267 -
Cich8g01712 544 CDD BAR 40 224 - -
Cich8g01712 544 Coils Coil 153 180 - -
Cich8g01712 544 Gene3D Arfaptin homology (AH) domain-BAR domain 26 235 IPR027267 -
Cich8g01712 544 MobiDBLite consensus disorder prediction 437 455 - -
Cich8g01712 544 MobiDBLite consensus disorder prediction 1 28 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich8g01712 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
63403 Cich6g01684 Cich8g01712
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:186379 Cich8g01712 Cich-Chr8:57187152 dispersed
Cich Cich-Chr6:24478603 Cich8g01712 Cich-Chr8:57187152 dispersed
Cich Cich-Chr8:8108385 Cich8g01712 Cich-Chr8:57187152 dispersed
Cich Cich-Chr6:24469898 Cich8g01712 Cich-Chr8:57187152 wgd