AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich8g01713 ATGGGGTGTGCGGTTTCTGTTTACAGGGTTGGAGGGAATAAGAAGCAATTGAAGATCCCTCTCGTTACCATACTTGTTCCTTCAATTCGTGCTCCTATAAACTCCAATTTTCAAAAACCCCTTAAAGGCCTTGTTCCTAAGGATCTAGCTGATCGTCTCACGTCTTTCCGGAATCAAATTGCTCTACTGGCGCAACAAACTGATGTATCAGCTGTTCCTGAATTGCTACATTCATTGGAGGAGTACTTACCGCTATTAATTGGCCTCACCGATCAAGAACTTGGTTTCCGAGATTTAATCGAATTCAAATGGAAAAGTGTAGACGAACGACAAGAAATATGCGTTTCAGATTCCTGGTTTGAATTACTATCTGTTGTTCATATGATGGCGATGCTGACATTAATGGAGGCAAACTCAAAATTGATTCCTAACCAAACTGTTACTACCGAAGAACTTGAATCCACAGATAACATTCGGTGTGCTGTTGACTTATTGGTGAAAGCAGCCGGATACCTTCAATTCTGTCTTCACAAAATTGTTCCCCAAATTCCACCTCATATCAAGATGAAGCTTCCTGTAGATTTGCAAGAGAATGTACTTGAAGCCACTTATATTCAAGCCCTAGCACAGGGTACTGAAATGCAACTTGCTTCGGCTGTTGAAAGTAAAAACGCGACTTTATCTGTAAAACGAAGACTAGCATGCGAGCAACTAAGTTATTTCGGTCAAGCTCACTACTGCTTGTCCACGTGTCAAGATCTTAATGGATACGGAAAAAAACATTTATCATTTATCAAATGGAAGTACCTCGAAGCAAAGGCTGCAGCATACTACTACCATGGTCTAATTACCGACAAAGGTACCGAACCATCATGCCACATCAGCGCCGTGTGTTGTTTTCTTGCGGCAGAAGAAATCTTAACCGAAAGCAAGAAAGCATGTTTGAACTTTTGCCTAACGGTTCCCATAACAAGGGCACCGGCTGCATGGGGTGCGATGAAGCATTTGAATAAGAAGATTCCGGAAACCGCAGCTAAAAAGTCGCAAATGTATGGGTATCTTTTAGAGCAAGAAAAGGATCTGGAAGTGCTGCCCGACCTGCCCGAGTTTGAGTTGTCATTGAGAGCGGACGAGTATGAATTACCGGATAAAGATGTGGCATGGGAGAGTGAAAATTGGATGATACCTAACCAGACACTTAAAACTCACTTAACAGATGATGAAGAAGATGAAAAGTGA 1239 41.97 MGCAVSVYRVGGNKKQLKIPLVTILVPSIRAPINSNFQKPLKGLVPKDLADRLTSFRNQIALLAQQTDVSAVPELLHSLEEYLPLLIGLTDQELGFRDLIEFKWKSVDERQEICVSDSWFELLSVVHMMAMLTLMEANSKLIPNQTVTTEELESTDNIRCAVDLLVKAAGYLQFCLHKIVPQIPPHIKMKLPVDLQENVLEATYIQALAQGTEMQLASAVESKNATLSVKRRLACEQLSYFGQAHYCLSTCQDLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGTEPSCHISAVCCFLAAEEILTESKKACLNFCLTVPITRAPAAWGAMKHLNKKIPETAAKKSQMYGYLLEQEKDLEVLPDLPEFELSLRADEYELPDKDVAWESENWMIPNQTLKTHLTDDEEDEK 412
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich8g01713 412 Pfam BRO1-like domain 46 310 IPR004328 -
Cich8g01713 412 Gene3D alix-aip1 like domains 37 395 IPR038499 -
Cich8g01713 412 SMART BRO1-2 23 390 IPR004328 -
Cich8g01713 412 CDD BRO1-Alix-like 10 375 - -
Cich8g01713 412 ProSiteProfiles BRO1 domain profile. 15 412 IPR004328 -
Cich8g01713 412 PANTHER UNCHARACTERIZED 14 401 IPR038898 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich8g01713 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr6:105419848 Cich8g01713 Cich-Chr8:57217603 dispersed