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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich8g01727 ATGTACGAAAACCCTGTTGGAATATGGAAATACTTGTACGATCCAACTAAATGTTCACTCGTAGAAATGGCCAAGTTCACCACCATGGATGCTCTCCTCTCCTTTGCTCTCTTCTTGGTCGTATCGTCGGTAAATGCCGGATCGGACGCTCCGTTCATCGTAGCTCACAAGAAAGCCACACTCAGTAGGCTCAACCCCGGCGCCGAAAAACTCTCCGTTTCCATCAACATTTATAACCAAGGATCTGCGTACGCAATCACCTCCTTCTCTATTCTTCCTTTACATCTACCTCTGATTTTTCGATCCACAGGGTTTGATGTCCATTTACTGGCTGCATATGATGTTAGCCTGACCGATGATGGCTGGTCTCCTGAATTATTCAGCATCATCTCAGGGAACACTTCAACCTCTTGGGAAAGACTCGATGTTGGTGCTGTTCTATCACACTCATTTGAGTTAGAGTCAACAGTGAAATCCGTCTTCTATGGCACACCGGCTGTTATTACATTCCGTGTCCCCACAAAGGCTGCATTACAGGAGGCATATTCGACCTCAATTCTACCTCTTGAAATTCTATCTGATAAGCCACGGGCGAGTGCATTTGGTCTTAGGTTGTTGGGCAAATATGGCAACTTAGTATCCGTAATCTCCATTGTCGTTTTATTTGTGTACCTACTCATAACACCACCTAAGTCCAATCCTTCAAAGGGAAGTAGAAAGAGGCGTTGA 729 45.13 MYENPVGIWKYLYDPTKCSLVEMAKFTTMDALLSFALFLVVSSVNAGSDAPFIVAHKKATLSRLNPGAEKLSVSINIYNQGSAYAITSFSILPLHLPLIFRSTGFDVHLLAAYDVSLTDDGWSPELFSIISGNTSTSWERLDVGAVLSHSFELESTVKSVFYGTPAVITFRVPTKAALQEAYSTSILPLEILSDKPRASAFGLRLLGKYGNLVSVISIVVLFVYLLITPPKSNPSKGSRKRR 242
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich8g01727 242 PANTHER TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT 31 85 - GO:0005783(PANTHER)
Cich8g01727 242 Pfam Translocon-associated protein beta (TRAPB) 36 86 - -
Cich8g01727 242 Pfam Translocon-associated protein beta (TRAPB) 111 237 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich8g01727 K13250 translocon-associated protein subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr8:57254344 Cich8g01727 Cich-Chr8:57444834 dispersed
Cich Cich-Chr8:57444834 Cich9g03115 Cich-Chr9:97205940 dispersed