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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien3g02871 ATGGAATCGAACAAAGAGAGGGGTGAAGTCAGGATTCATGAAAATTTAGATGAACTTAGCACCGATTTGGCTGATTACGTGGCAGAATTATCGGAGGCATCTGTGAAAGAACGTGGCGTTTTCTCCATTGCTTTATCTGGTGGTTCTTTGATTAGCTTAATGAGGAATCTATGTGGAGCTCCTTATAACAAAACTGTAGATTGGTCGAAATGGTATATATTTTGGGCAGACGAACGTGTGGTTGCCAAGAATCATGTCGATAGCAACTATAAACTTGCCAAAGATCATCTTTTGTCAAAGTTACCGATTGTACCGAGCCATGTACATTCCATCAACGATTCTCTCACTGCAGAAGAAGCAGCAAACGAGTATGAGTTTGTGATAAGACAGCTTGTCAGGACACGTGTGATTAATGTGTCTGACATCAGCGACTGCCCGAAGTTTGACCTAATCCTACTTGGCATGGGCCCGGATGGACACGTGGCGTCATTGTTCCCTAACCATGCGGTTCTTGAAGAAAAGAATGAGTGGGTGACATTCATCACGACTTCACCTAAACCACCGCCCGAAAGGATCACCTTCACACTGCCCGTTATCAACTCTGCCGCCAATGTGGTGGTGGTGGTGACAGGTGGCGGGAAGGCGGAGGCTGCCAGGCTGGCGATAGATGATGTGGGACCCGAGTGTGAGGTGTTGCCAGCTAGGATGATTGAACCGGTTGTTGGGAAACTGGTGTGGTTTTTGGATAACCAGGCTGGTTCAAAGCTTAAGAGCTTTTCTCAATTTTCTTAA 792 46.21 MESNKERGEVRIHENLDELSTDLADYVAELSEASVKERGVFSIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVINVSDISDCPKFDLILLGMGPDGHVASLFPNHAVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVVVVVTGGGKAEAARLAIDDVGPECEVLPARMIEPVVGKLVWFLDNQAGSKLKSFSQFS 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien3g02871 263 Gene3D - 5 259 - -
Cien3g02871 263 SUPERFAMILY NagB-RpiA-CoA transferase-like 10 257 IPR037171 -
Cien3g02871 263 NCBIfam 6-phosphogluconolactonase 12 256 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Cien3g02871 263 Coils Coil 16 36 - -
Cien3g02871 263 CDD 6PGL 17 248 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Cien3g02871 263 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 16 246 IPR006148 GO:0005975(InterPro)
Cien3g02871 263 FunFam Probable 6-phosphogluconolactonase 5 257 - -
Cien3g02871 263 PANTHER 6-PHOSPHOGLUCONOLACTONASE 3 258 IPR039104 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien3g02871 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
66001 Cien3g02871 Cien8g00221
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1689872 Cien Cien3g02871 Cien-Chr3:76193121 Cien9g01073 Cien-Chr9:15951884
1706484 Cien Cien3g04019 Cien-Chr3:96114933 Cien3g02871 Cien-Chr3:76193121
1713812 Cien Cien3g02871 Cien-Chr3:76193121 Cien8g00221 Cien-Chr8:4608782