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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g02991 ATGCCTGGGAGCTTAGAGCCTTTGGATGTAGGTGTTCAGATCCCGTATCATTTCAGGTGTCCGATTTCTCTTGAGCTTATGAGAGACCCGGTGATCGTTGAGACGGGTCAGACATACGACCGGCCGAGTATTGAGTCATGGGTGGCCACCGGAAATACTACTTGTCCTGTCACTCGTCTGCCGCTTACGGACTTCACTCTCATCCCTAACCACACGCTACGACGTCTCATCCAGGAATGGTGTGTTGCGAACCGGTCTTACGGCGTGGAGCGGATTCCGACGCCGAAACAACCGGCGGATCCTGTTATGGTCCGGTCCTTACTCAGCCAGGCTGCCTCTGAGTCTAATTCTAGGCATGCCAGGCTGTCCGCTCTTCGTCGCCTCCGTGGGCTGGCACGTGACTCGGATAAAAATCGTTCGGTGATCTCAACGCATAACGCACGTGAGGTGTTGCTTGGGGTGTTGTTCTCGGAAACCGACGTGAACTCATCGGAGTTGAATCTCGAGTCGCTTGCGATTCTATCGTCGTTTCCGCTTTCTGAATCGGAGTGTGTATTGGTGTCGTCGGATCCGGATCGGATTTCGTATCTGATTTTTCTTCTATCGCATTCGTCTATTGACGTTCGAGTAAACGCGGCTTCCTTACTTGAGAACGTCGTCGCCGGAACGCGATCTCCGGAGAACCGAGCGGAAATCAGCAATAACGATGAGGTTTTCGACCGAATTGTCGGAATTCTGAATTATCCTTTGTCGTATCCGCGTGCAATGAAAGTCGGCGTCAAAGCTTTATTCGCTTTATGCTTGGTGAAGCAACACCGTCACAAGGCGGTGGAGGCAGGAGCGGTGGAGGCGCTCATTAACAGACTAGCAGATTTCGAAAAATGCGACGCCGAAAGAGCTCTGGCGACGGTAGAGCTTCTATGCCGAATACCACAAGGATGCGCCGCATTCGCATCTCACGCGCTCACCGTACCGCTTCTAGTCAAAATCATCCTGAAAATATCCGATCGAGCAACGGAATACGCAGCAGGCGCACTGCTGTCACTTTGCTCGGCGGCAGAACGGTTGCAGAGGGAGGCGGTGGCGGCGGGGGTGTTGACACAGCTGTTGTTGCTCGTACAAAGCGATTGTACAGAGCGTGCAAAGCGAAAAGCGCAAATGCTCTTGAAATTGCTCCGGGATTCGTGGCCGGAAAAATCGATAAGGAATTCGGATGATTTTGCGTGCAGCGACGTCGTTCCGTATTGA 1248 52.8 MPGSLEPLDVGVQIPYHFRCPISLELMRDPVIVETGQTYDRPSIESWVATGNTTCPVTRLPLTDFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPADPVMVRSLLSQAASESNSRHARLSALRRLRGLARDSDKNRSVISTHNAREVLLGVLFSETDVNSSELNLESLAILSSFPLSESECVLVSSDPDRISYLIFLLSHSSIDVRVNAASLLENVVAGTRSPENRAEISNNDEVFDRIVGILNYPLSYPRAMKVGVKALFALCLVKQHRHKAVEAGAVEALINRLADFEKCDAERALATVELLCRIPQGCAAFASHALTVPLLVKIILKISDRATEYAAGALLSLCSAAERLQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEKSIRNSDDFACSDVVPY 415
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g02991 415 SMART Ubox-2 17 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cien5g02991 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cien5g02991 415 Pfam U-box domain 14 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cien5g02991 415 SUPERFAMILY RING-U-box 11 89 - -
Cien5g02991 415 CDD RING-Ubox-PUB 15 67 IPR045210 -
Cien5g02991 415 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 8 91 IPR013083 -
Cien5g02991 415 Gene3D - 104 316 IPR011989 -
Cien5g02991 415 Gene3D - 317 415 IPR011989 -
Cien5g02991 415 SUPERFAMILY ARM repeat 105 392 IPR016024 -
Cien5g02991 415 PANTHER WDSAM1 PROTEIN 12 399 IPR045185 GO:0061630(InterPro)
Cien5g02991 415 FunFam RING-type E3 ubiquitin transferase 8 90 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g02991 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
64432 Cien1g03100 Cien5g02991
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr3:83299550 Cien5g02991 Cien-Chr5:71504262 dispersed
Cien Cien-Chr5:71504262 Cien9g00388 Cien-Chr9:6306471 dispersed
Cien Cien-Chr5:25783317 Cien5g02991 Cien-Chr5:71504262 transposed
Cien Cien-Chr1:82884246 Cien5g02991 Cien-Chr5:71504262 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00113 . 490 754 U-box gene family AT3G54790 30.0 3.79e-18 85.9
Cien9g00227 . 6 402 U-box gene family AT2G35930 33.495 3.88e-69 223.0
Cien9g00270 ACH 446 823 U-box gene family AT2G23140 43.702 3.80e-81 266.0
Cien9g00388 . 6 369 U-box gene family AT4G21350 60.929 1.67e-144 412.0
Cien9g00650 . 334 607 U-box gene family AT1G23030 33.803 6.59e-34 129.0
Cien9g00981 ACH 242 309 U-box gene family AT1G71020 53.623 1.58e-17 86.3
Cien9g01547 . 340 501 U-box gene family AT5G67530 50.909 1.90e-45 167.0
Cien9g01797 . 350 501 U-box gene family AT5G67530 41.25 1.20e-32 130.0
Cien9g02404 . 357 551 U-box gene family AT2G28830 23.077 8.71e-10 60.1
Cien8g00607 . 25 797 U-box gene family AT1G20780 27.806 4.15e-59 216.0
Cien8g00881 . 237 514 U-box gene family AT2G33340 30.877 1.24e-34 135.0
Cien8g01058 . 1 728 U-box gene family AT1G29340 60.298 0.0 819.0
Cien8g01098 . 438 717 U-box gene family AT1G67530 31.338 3.49e-23 100.0
Cien8g01164 . 771 829 U-box gene family AT2G23140 50.0 6.27e-14 63.2
Cien8g01272 ACH 527 811 U-box gene family AT2G23140 24.161 7.47e-14 72.8
Cien8g01422 ACH 436 823 U-box gene family AT2G23140 42.643 3.00e-77 254.0
Cien8g01451 . 15 183 U-box gene family AT5G65500 31.579 9.36e-14 69.7
Cien8g01527 . 204 254 U-box gene family AT4G21350 54.902 1.47e-10 57.0
Cien8g01758 ACH 353 477 U-box gene family AT5G67530 50.0 2.40e-31 116.0
Cien8g01802 . 33 543 U-box gene family AT5G65200 51.737 5.11e-162 470.0
Cien8g02080 . 864 903 U-box gene family AT2G28830 80.0 5.38e-15 66.2
Cien8g02235 ACH 559 711 U-box gene family AT2G23140 36.129 9.07e-11 65.5
Cien8g02418 . 6 272 U-box gene family AT3G18710 40.293 7.31e-60 194.0
Cien8g02615 . 560 819 U-box gene family AT2G23140 37.218 5.36e-38 143.0
Cien8g02724 ACH 18 448 U-box gene family AT3G49810 66.89 0.0 576.0
Cien8g02784 ACH 92 706 U-box gene family AT5G67340 50.698 0.0 603.0
Cien8g02919 . 352 491 U-box gene family AT5G67530 45.395 2.40e-33 129.0
Cien8g03082 . 258 359 U-box gene family AT5G40140 68.627 2.00e-41 142.0
Cien8g03137 . 2 1030 U-box gene family AT5G15400 73.572 0.0 1570.0
Cien8g03248 . 59 538 U-box gene family AT5G40140 52.546 5.24e-163 471.0
Cien8g03344 . 488 706 U-box gene family AT1G24330 35.965 1.64e-22 96.3
Cien7g00827 ACH 1 768 U-box gene family AT1G27910 60.622 0.0 902.0
Cien7g00855 . 353 491 U-box gene family AT5G67530 48.252 4.08e-36 133.0
Cien7g01307 ACH 353 477 U-box gene family AT5G67530 48.529 1.17e-29 114.0
Cien7g01323 ACH 353 494 U-box gene family AT5G67530 41.176 4.11e-28 110.0
Cien7g01452 . 346 492 U-box gene family AT5G67530 28.75 4.03e-11 60.5
Cien7g01532 . 1 359 U-box gene family AT1G71020 37.912 4.91e-59 198.0
Cien7g01535 . 75 151 U-box gene family AT1G23030 50.0 1.57e-15 70.1
Cien7g01536 ACH 10 604 U-box gene family AT1G23030 54.366 0.0 608.0
Cien7g01986 . 1 595 U-box gene family AT5G67530 75.333 0.0 899.0
Cien7g03213 . 26 766 U-box gene family AT1G76390 26.877 1.15e-40 160.0
Cien7g03247 . 315 380 U-box gene family AT5G65500 37.879 6.88e-07 42.7
Cien7g03264 . 516 742 U-box gene family AT2G23140 32.773 1.06e-20 96.3
Cien6g00032 . 653 710 U-box gene family AT3G54790 46.552 1.22e-10 58.5
Cien6g00233 . 8 667 U-box gene family AT1G60190 40.658 3.26e-169 499.0
Cien6g00271 . 379 564 U-box gene family AT3G46510 31.068 2.65e-06 47.8
Cien6g00393 . 368 453 U-box gene family AT3G46510 44.186 6.85e-15 75.9
Cien6g00467 . 9 107 U-box gene family AT3G07370 32.0 3.42e-08 52.4
Cien6g00492 . 495 827 U-box gene family AT2G23140 47.006 9.79e-84 271.0
Cien6g00646 . 279 422 U-box gene family AT2G33340 29.252 1.01e-09 58.5
Cien6g00943 . 633 710 U-box gene family AT3G54790 45.57 4.05e-13 66.2
Cien6g01173 . 237 485 U-box gene family AT2G33340 25.373 3.48e-07 53.1
Cien6g01690 ACH 366 621 U-box gene family AT3G46510 24.138 5.50e-09 56.6
Cien6g01827 ACH 236 470 U-box gene family AT2G33340 30.8 2.13e-19 90.9
Cien6g01830 . 209 481 U-box gene family AT2G33340 28.475 8.00e-18 82.8
Cien6g02106 . 618 733 U-box gene family AT3G54790 45.299 1.15e-23 92.8
Cien5g00240 ACH 416 634 U-box gene family AT5G67340 28.947 2.18e-14 75.1
Cien5g00288 . 357 477 U-box gene family AT5G67530 51.128 1.17e-32 131.0
Cien5g00427 ACH 1 460 U-box gene family AT3G07360 57.469 0.0 528.0
Cien5g00428 ACH 1 275 U-box gene family AT3G07370 62.455 2.71e-127 361.0
Cien5g00568 . 227 317 U-box gene family AT3G49810 53.846 1.62e-23 91.3
Cien5g00607 . 242 467 U-box gene family AT1G23030 32.245 3.31e-17 85.5
Cien5g00742 ACH 7 414 U-box gene family AT3G18710 43.133 4.84e-107 320.0
Cien5g01241 ACH 2 635 U-box gene family AT3G46510 67.347 0.0 850.0
Cien5g01374 . 353 475 U-box gene family AT5G67530 44.776 7.05e-27 105.0
Cien5g01583 . 27 807 U-box gene family AT1G76390 27.652 2.99e-57 209.0
Cien5g01791 . 43 831 U-box gene family AT2G45910 42.875 0.0 638.0
Cien5g02190 ACH 11 624 U-box gene family AT3G54850 63.799 0.0 767.0
Cien5g02386 . 1 444 U-box gene family AT5G65920 62.838 0.0 563.0
Cien5g02991 ACH 1 421 U-box gene family AT1G49780 65.796 0.0 538.0
Cien5g03016 . 352 494 U-box gene family AT5G67530 43.871 5.67e-33 127.0
Cien5g03057 ACH 209 514 U-box gene family AT2G33340 25.449 2.52e-14 72.4
Cien5g03086 ACH 233 385 U-box gene family AT2G33340 28.662 1.74e-08 55.1
Cien5g03265 ACH 11 90 U-box gene family AT3G07370 42.5 1.72e-08 54.7
Cien5g03338 . 67 154 U-box gene family AT4G36550 41.111 8.61e-14 67.0
Cien5g03342 . 243 460 U-box gene family AT1G04510 27.686 9.64e-07 50.4
Cien5g03568 . 346 633 U-box gene family AT3G46510 63.542 8.29e-118 363.0
Cien4g00092 ACH 527 782 U-box gene family AT2G23140 26.493 4.71e-11 63.9
Cien4g00198 . 353 495 U-box gene family AT5G67530 43.137 3.53e-28 108.0
Cien4g00995 . 344 639 U-box gene family AT3G46510 61.824 3.86e-117 361.0
Cien4g01210 . 1 521 U-box gene family AT2G33340 72.486 0.0 791.0
Cien4g01316 . 77 177 U-box gene family AT4G36550 38.835 4.40e-16 72.4
Cien4g01732 ACH 6 410 U-box gene family AT2G35930 56.553 3.59e-165 468.0
Cien4g01733 ACH 6 410 U-box gene family AT2G35930 54.846 8.15e-164 466.0
Cien4g01734 ACH 6 410 U-box gene family AT2G35930 55.319 4.74e-162 461.0
Cien4g01950 . 214 401 U-box gene family AT1G49780 30.457 9.62e-13 66.6
Cien4g01981 . 633 710 U-box gene family AT3G54790 46.835 1.59e-14 68.2
Cien4g02006 ACH 366 621 U-box gene family AT3G46510 24.138 1.96e-08 55.1
Cien4g02074 . 395 627 U-box gene family AT3G46510 27.848 2.92e-18 85.9
Cien4g02075 . 357 492 U-box gene family AT5G67530 39.865 1.04e-19 92.0
Cien4g02509 ACH 334 565 U-box gene family AT1G23030 26.383 2.91e-15 77.0
Cien4g02636 . 308 423 U-box gene family AT2G33340 29.915 9.65e-09 57.0
Cien4g02727 . 13 113 U-box gene family AT3G46510 24.752 2.38e-06 43.5
Cien3g00112 . 266 507 U-box gene family AT2G33340 24.715 6.02e-09 56.2
Cien3g00123 . 393 577 U-box gene family AT2G28830 25.397 6.41e-07 50.1
Cien3g00410 . 45 830 U-box gene family AT2G45910 35.945 6.91e-152 463.0
Cien3g00419 ACH 2 638 U-box gene family AT3G46510 68.289 0.0 859.0
Cien3g00494 ACH 237 463 U-box gene family AT2G33340 26.054 1.24e-12 68.6
Cien3g00583 . 832 961 U-box gene family AT2G28830 70.455 5.41e-55 188.0
Cien3g00616 . 653 710 U-box gene family AT3G54790 46.552 5.70e-12 58.9
Cien3g01460 . 53 660 U-box gene family AT5G42340 57.674 0.0 682.0
Cien3g01526 ACH 353 477 U-box gene family AT5G67530 48.529 2.08e-30 114.0
Cien3g02289 ACH 1 768 U-box gene family AT1G27910 63.178 0.0 953.0
Cien3g02435 . 260 423 U-box gene family AT2G33340 25.381 1.25e-07 52.0
Cien3g02553 . 9 686 U-box gene family AT1G60190 43.084 0.0 552.0
Cien3g02936 ACH 26 612 U-box gene family AT1G23030 60.784 0.0 692.0
Cien3g03099 . 5 435 U-box gene family AT5G37490 42.152 8.09e-108 324.0
Cien3g03101 . 20 459 U-box gene family AT3G11840 40.541 1.39e-100 305.0
Cien3g03280 . 4 809 U-box gene family AT1G76390 63.054 0.0 984.0
Cien3g03284 . 219 800 U-box gene family AT1G20780 57.288 0.0 612.0
Cien3g03528 . 2 79 U-box gene family AT5G15400 73.077 2.63e-30 114.0
Cien3g03690 . 353 475 U-box gene family AT5G67530 47.015 9.27e-27 105.0
Cien3g03805 . 57 272 U-box gene family AT3G18710 31.839 6.30e-24 97.4
Cien3g04004 . 260 510 U-box gene family AT2G33340 21.484 8.92e-06 47.0
Cien3g04128 . 98 212 U-box gene family AT3G07360 47.826 1.60e-25 98.2
Cien2g00053 . 313 660 U-box gene family AT5G42340 60.92 4.80e-141 414.0
Cien2g00055 . 53 316 U-box gene family AT5G42340 43.284 1.41e-72 233.0
Cien2g00075 . 279 427 U-box gene family AT2G33340 27.329 2.10e-06 47.4
Cien2g00464 . 7 402 U-box gene family AT2G35930 42.892 6.49e-106 317.0
Cien2g00786 ACH 4 410 U-box gene family AT2G35930 54.916 4.98e-162 460.0
Cien2g00790 ACH 3 435 U-box gene family AT3G52450 55.172 2.21e-164 471.0
Cien2g00843 . 346 496 U-box gene family AT5G67530 50.331 9.98e-51 171.0
Cien2g01034 ACH 440 696 U-box gene family AT5G67340 26.129 5.02e-12 69.3
Cien2g01059 . 1 435 U-box gene family AT5G37490 45.805 2.46e-128 376.0
Cien2g01088 . 19 786 U-box gene family AT5G65500 44.571 0.0 633.0
Cien2g01340 . 12 666 U-box gene family AT4G36550 36.662 3.56e-125 387.0
Cien2g01448 ACH 1 444 U-box gene family AT5G65920 69.369 0.0 626.0
Cien2g01586 . 9 94 U-box gene family AT3G07370 29.07 1.91e-06 47.0
Cien2g01682 . 22 835 U-box gene family AT4G25160 51.779 0.0 820.0
Cien2g01732 . 238 278 U-box gene family AT1G29340 65.854 1.86e-14 65.9
Cien2g01830 . 7 635 U-box gene family AT3G46510 39.312 1.91e-130 398.0
Cien2g02203 . 2 56 U-box gene family AT5G15400 63.636 3.79e-16 68.9
Cien2g02244 ACH 11 626 U-box gene family AT3G54850 64.448 0.0 769.0
Cien2g02617 . 38 160 U-box gene family AT1G76390 32.283 6.38e-12 59.7
Cien2g03144 ACH 5 707 U-box gene family AT5G67340 48.853 0.0 647.0
Cien2g03160 ACH 344 561 U-box gene family AT1G71020 26.818 1.51e-13 71.6
Cien2g03393 ACH 734 800 U-box gene family AT2G28830 43.434 1.77e-14 75.1
Cien2g03951 . 219 451 U-box gene family AT2G33340 22.407 5.56e-12 67.4
Cien2g04065 . 381 661 U-box gene family AT4G36550 32.979 1.82e-31 128.0
Cien2g04295 . 77 177 U-box gene family AT4G36550 40.777 9.10e-18 77.0
Cien1g00818 ACH 8 410 U-box gene family AT2G35930 53.791 3.99e-158 450.0
Cien1g00995 . 346 496 U-box gene family AT5G67530 47.02 1.21e-41 157.0
Cien1g01247 ACH 337 422 U-box gene family AT2G33340 35.955 1.03e-08 55.5
Cien1g01925 . 397 490 U-box gene family AT1G29340 57.447 9.06e-28 109.0
Cien1g02103 . 339 496 U-box gene family AT5G67530 27.95 2.43e-16 74.7
Cien1g02239 . 601 636 U-box gene family AT5G67340 66.667 2.82e-08 49.3
Cien1g02310 ACH 232 307 U-box gene family AT1G23030 55.128 5.87e-19 90.1
Cien1g02415 . 300 463 U-box gene family AT1G04510 23.81 3.30e-09 57.8
Cien1g02588 ACH 734 805 U-box gene family AT2G28830 45.192 3.17e-16 80.5
Cien1g02908 ACH 12 80 U-box gene family AT3G07370 36.232 9.71e-07 49.3
Cien1g03100 ACH 1 421 U-box gene family AT1G49780 65.321 0.0 538.0
Cien1g03445 . 1 656 U-box gene family AT5G01830 54.97 0.0 715.0
Cien1g03815 ACH 237 464 U-box gene family AT2G33340 25.856 4.81e-12 65.5
Cien1g04134 ACH 1 276 U-box gene family AT3G07370 66.187 1.48e-132 374.0
Cien1g04135 ACH 1 460 U-box gene family AT3G07360 56.025 2.38e-178 505.0
Cien1g04155 . 236 317 U-box gene family AT2G33340 31.461 1.44e-06 48.5
Cien1g04192 ACH 236 507 U-box gene family AT2G33340 25.704 6.22e-15 76.6
Cien1g04430 ACH 530 787 U-box gene family AT2G23140 26.538 2.88e-14 75.1