AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03009 ATGTCTTCTGTTTTCGGATCGGGAAGTATAATAACATCCGATGAATTTCTCCTCCAAATCCATGGTTTTCTACGAGTACACAAAGATGGCAAATGTGAAAGATTTGTGGGCAATAAGACTGTGCCCGCCGGAATCGATTCCTCAACCGGAGTCCAGTCAAAAGACGTCGTCATCTCACCGGTAACCAACCTGTCAGCAAGACTTTACATTCCCAAAACCGTAACCCCAGATCGGAAACTGCCTATTCTTGTATACTACCATGGCGGTGGTTTCGTAGTCGAATCCGCTAAATCTCCTACTTATCACCCTACACTTAACCTTATCACGGCGGAGTCTAATGTAATCATCGTCTCCGTTGACTACAGGCTGGCGCCGGAGCATCCTATTCCAACTGGATACAACGACTCGTGGGAAGCGATCAAGTGGGTGGCTACCCATAGTAATGCGGGTGGTCCAGAGCCATTGTTAAATGACTATGGTGATTTTCAGAAGGTGTTTCTTGCCGGAGATAGTGCCGGAGCGAATATCGCCCACAACATGGCAATCCGGGCTGGGTCAGAAACGATCCATGCAATAAAACTAGAAGGCATCATCCTTCTTCACCCATATTTCGGAGGAAATGAATCGATTGGATCAGAACTTGGGAAACATAAGCAGTTAAAAGCATACACCGATCAATTCTGGAACTTGGCAAATGCTTCAAGGAGTGGGTTGGATGACCCGTTGTTTAACCCGCAAAAGAATCCGAATCTTTCGGGTTTGGGCTGCTCCAAGATTCTTTTATGTGTTGCGGAGAAGGATAATTTTAAGGACAGGGGTTTGTATTACAAGGAATTGATGGATAAAAGTGGATGGCCAGGGAAATTGGAGATGATGGAGACAAAGCAAGAGGATCATGTGTTCTTTCTCTTCAATACTTCTAGTCATAATTCCCATGCTTTGCGCAAGAGAATCTATACCTTTATTAATCAAGTTAATAAGATTGGAGGGAATGGTGTCGTGGATGCCGAGCTCCACCTCAGCATTTAG 1029 45.0 MSSVFGSGSIITSDEFLLQIHGFLRVHKDGKCERFVGNKTVPAGIDSSTGVQSKDVVISPVTNLSARLYIPKTVTPDRKLPILVYYHGGGFVVESAKSPTYHPTLNLITAESNVIIVSVDYRLAPEHPIPTGYNDSWEAIKWVATHSNAGGPEPLLNDYGDFQKVFLAGDSAGANIAHNMAIRAGSETIHAIKLEGIILLHPYFGGNESIGSELGKHKQLKAYTDQFWNLANASRSGLDDPLFNPQKNPNLSGLGCSKILLCVAEKDNFKDRGLYYKELMDKSGWPGKLEMMETKQEDHVFFLFNTSSHNSHALRKRIYTFINQVNKIGGNGVVDAELHLSI 342
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03009 342 PANTHER ARYLACETAMIDE DEACETYLASE 22 314 IPR050466 -
Cien5g03009 342 Gene3D alpha-beta hydrolase 16 329 IPR029058 -
Cien5g03009 342 SUPERFAMILY alpha-beta-Hydrolases 47 325 IPR029058 -
Cien5g03009 342 ProSitePatterns Lipolytic enzymes G-D-X-G family, putative serine active site. 165 177 IPR033140 -
Cien5g03009 342 Pfam alpha-beta hydrolase fold 83 302 IPR013094 GO:0016787(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03009 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:72040128 Cien7g02351 Cien-Chr7:35170622 dispersed
Cien Cien-Chr5:72040128 Cien5g03011 Cien-Chr5:72049389 proximal
Cien Cien-Chr5:72029360 Cien5g03009 Cien-Chr5:72040128 tandem
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00137 . 36 306 Carbohydrate Esterase gene family AT1G68620 35.563 1.41e-49 167.0
Cien9g00138 . 31 253 Carbohydrate Esterase gene family AT1G68620 39.394 2.85e-49 166.0
Cien9g00139 . 50 255 Carbohydrate Esterase gene family AT1G68620 38.288 3.70e-44 150.0
Cien9g00174 ACH 56 220 Carbohydrate Esterase gene family AT1G53830 28.655 1.35e-10 58.2
Cien9g00176 . 56 220 Carbohydrate Esterase gene family AT1G53830 27.168 2.93e-12 63.2
Cien9g00177 . 41 210 Carbohydrate Esterase gene family AT3G05620 24.571 1.29e-08 52.4
Cien9g00178 . 56 239 Carbohydrate Esterase gene family AT1G53830 24.737 1.95e-10 57.8
Cien9g01659 . 260 326 Carbohydrate Esterase gene family AT3G48700 40.299 3.46e-10 53.9
Cien9g01661 . 2 326 Carbohydrate Esterase gene family AT3G48700 39.514 3.06e-83 254.0
Cien9g01708 . 2 415 Carbohydrate Esterase gene family AT3G05910 64.988 0.0 589.0
Cien8g00238 ACH 68 229 Carbohydrate Esterase gene family AT5G53370 31.609 1.86e-19 84.0
Cien8g00316 . 9 331 Carbohydrate Esterase gene family AT1G68620 52.553 4.71e-118 343.0
Cien8g00562 . 24 341 Carbohydrate Esterase gene family AT5G16080 34.132 5.02e-58 189.0
Cien8g00564 . 24 341 Carbohydrate Esterase gene family AT5G16080 33.234 3.41e-57 187.0
Cien8g00565 . 24 341 Carbohydrate Esterase gene family AT5G16080 33.533 3.57e-58 189.0
Cien8g00566 . 24 319 Carbohydrate Esterase gene family AT5G16080 34.416 7.47e-56 183.0
Cien8g00567 . 28 319 Carbohydrate Esterase gene family AT5G16080 36.513 2.22e-57 187.0
Cien8g01009 . 27 135 Carbohydrate Esterase gene family AT3G16970 25.664 6.48e-08 46.6
Cien8g03151 . 59 352 Carbohydrate Esterase gene family AT5G47500 38.361 1.36e-67 213.0
Cien8g03152 . 65 349 Carbohydrate Esterase gene family AT5G07430 39.465 2.86e-67 213.0
Cien8g03374 . 193 260 Carbohydrate Esterase gene family AT1G26120 38.235 2.70e-08 49.3
Cien8g03424 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 68.387 0.0 631.0
Cien7g00107 ACH 52 213 Carbohydrate Esterase gene family AT3G14310 26.22 7.72e-17 76.3
Cien7g00108 ACH 52 213 Carbohydrate Esterase gene family AT3G14310 27.439 1.39e-18 81.3
Cien7g00590 ACH 3 375 Carbohydrate Esterase gene family AT4G19420 49.347 3.98e-145 416.0
Cien7g00594 ACH 6 375 Carbohydrate Esterase gene family AT4G19420 52.0 1.05e-144 414.0
Cien7g00595 . 6 375 Carbohydrate Esterase gene family AT4G19420 53.175 2.82e-146 419.0
Cien7g00809 . 1 446 Carbohydrate Esterase gene family AT5G14310 62.5 0.0 541.0
Cien7g01505 . 26 324 Carbohydrate Esterase gene family AT1G24793 56.856 1.61e-125 360.0
Cien7g02157 ACH 31 422 Carbohydrate Esterase gene family AT3G02410 71.646 0.0 595.0
Cien7g02279 . 59 362 Carbohydrate Esterase gene family AT5G47500 37.421 8.14e-69 218.0
Cien7g02351 . 1 315 Carbohydrate Esterase gene family AT1G19190 46.875 3.99e-96 285.0
Cien7g03014 . 300 332 Carbohydrate Esterase gene family AT2G47550 75.758 4.51e-10 53.1
Cien7g03176 . 331 363 Carbohydrate Esterase gene family AT3G14310 51.515 1.37e-06 42.7
Cien7g03300 ACH 56 220 Carbohydrate Esterase gene family AT1G53830 30.409 6.98e-16 73.6
Cien7g03333 . 58 301 Carbohydrate Esterase gene family AT1G68620 33.992 9.49e-43 148.0
Cien6g00819 . 59 213 Carbohydrate Esterase gene family AT3G14310 29.936 3.68e-17 77.0
Cien6g00821 ACH 59 213 Carbohydrate Esterase gene family AT3G14310 28.662 1.09e-17 78.6
Cien6g00822 ACH 53 213 Carbohydrate Esterase gene family AT3G14310 26.829 3.17e-16 74.3
Cien6g00823 . 62 218 Carbohydrate Esterase gene family AT1G53830 25.786 1.70e-15 71.6
Cien6g01032 ACH 4 389 Carbohydrate Esterase gene family AT4G19420 61.499 0.0 531.0
Cien6g01033 ACH 3 389 Carbohydrate Esterase gene family AT4G19420 61.697 0.0 531.0
Cien6g01267 . 3 375 Carbohydrate Esterase gene family AT4G19420 53.704 4.54e-154 438.0
Cien6g01777 . 22 332 Carbohydrate Esterase gene family AT1G68620 38.871 6.07e-71 221.0
Cien6g02145 . 5 561 Carbohydrate Esterase gene family AT3G10710 55.009 0.0 632.0
Cien5g00021 . 93 606 Carbohydrate Esterase gene family AT4G33230 34.256 8.84e-99 312.0
Cien5g00080 . 49 532 Carbohydrate Esterase gene family AT4G02300 52.857 0.0 522.0
Cien5g00081 . 11 571 Carbohydrate Esterase gene family AT4G02330 58.259 0.0 665.0
Cien5g00099 . 62 216 Carbohydrate Esterase gene family AT3G14310 31.646 1.01e-15 72.4
Cien5g00189 ACH 1 343 Carbohydrate Esterase gene family AT3G63010 74.063 0.0 542.0
Cien5g01619 . 1 359 Carbohydrate Esterase gene family AT5G61570 49.046 1.86e-103 306.0
Cien5g01669 . 83 594 Carbohydrate Esterase gene family AT3G47400 52.632 0.0 532.0
Cien5g02339 . 167 244 Carbohydrate Esterase gene family AT5G45280 55.128 3.85e-24 95.1
Cien5g02664 . 1 416 Carbohydrate Esterase gene family AT5G26670 66.114 0.0 592.0
Cien5g03002 . 1 258 Carbohydrate Esterase gene family AT3G48690 47.308 2.25e-70 217.0
Cien5g03005 . 1 324 Carbohydrate Esterase gene family AT3G48690 48.773 1.54e-90 271.0
Cien5g03007 . 1 321 Carbohydrate Esterase gene family AT3G48690 46.296 9.91e-85 256.0
Cien5g03008 . 4 330 Carbohydrate Esterase gene family AT3G48700 44.207 2.86e-88 266.0
Cien5g03009 . 12 325 Carbohydrate Esterase gene family AT3G48700 46.497 1.00e-88 268.0
Cien5g03011 . 4 324 Carbohydrate Esterase gene family AT3G48690 46.729 8.39e-93 277.0
Cien5g03739 . 9 380 Carbohydrate Esterase gene family AT5G55590 61.333 1.48e-150 427.0
Cien4g00589 . 4 329 Carbohydrate Esterase gene family AT3G48700 47.853 6.56e-96 288.0
Cien4g00591 . 4 329 Carbohydrate Esterase gene family AT3G48700 48.16 8.99e-99 294.0
Cien4g00596 . 95 329 Carbohydrate Esterase gene family AT3G48700 45.106 6.19e-66 206.0
Cien4g01811 ACH 69 729 Carbohydrate Esterase gene family AT5G36210 73.233 0.0 1038.0
Cien4g02112 . 91 388 Carbohydrate Esterase gene family AT1G05310 41.611 7.01e-82 253.0
Cien4g02183 . 53 592 Carbohydrate Esterase gene family AT3G14310 63.333 0.0 672.0
Cien4g02184 . 61 357 Carbohydrate Esterase gene family AT1G53830 46.128 6.66e-80 253.0
Cien4g02185 . 362 587 Carbohydrate Esterase gene family AT3G14310 68.142 1.50e-109 327.0
Cien4g02186 . 61 357 Carbohydrate Esterase gene family AT1G53830 51.342 2.11e-86 268.0
Cien4g02187 . 358 583 Carbohydrate Esterase gene family AT1G53830 69.912 1.28e-108 323.0
Cien4g02188 . 52 588 Carbohydrate Esterase gene family AT3G14310 56.32 0.0 583.0
Cien4g02189 . 55 583 Carbohydrate Esterase gene family AT1G53830 55.094 0.0 571.0
Cien4g02859 . 2 325 Carbohydrate Esterase gene family AT3G48700 45.427 3.23e-97 290.0
Cien4g03121 . 213 292 Carbohydrate Esterase gene family AT1G11580 35.294 3.15e-10 53.1
Cien3g00721 . 50 216 Carbohydrate Esterase gene family AT3G14310 28.571 9.95e-15 69.7
Cien3g00789 . 234 321 Carbohydrate Esterase gene family AT3G05620 55.682 1.80e-25 101.0
Cien3g01902 . 42 205 Carbohydrate Esterase gene family AT1G25141 28.962 1.09e-10 59.7
Cien3g02033 . 45 546 Carbohydrate Esterase gene family AT5G09760 61.31 0.0 644.0
Cien3g02915 ACH 52 218 Carbohydrate Esterase gene family AT3G14310 24.405 1.65e-15 72.4
Cien3g02919 . 84 238 Carbohydrate Esterase gene family AT3G49220 31.707 2.10e-16 75.1
Cien3g02920 . 38 554 Carbohydrate Esterase gene family AT1G23200 53.422 0.0 532.0
Cien3g03045 . 33 427 Carbohydrate Esterase gene family AT5G15860 62.594 1.64e-178 509.0
Cien3g03788 . 8 359 Carbohydrate Esterase gene family AT1G69940 50.986 2.23e-134 386.0
Cien3g03812 . 32 359 Carbohydrate Esterase gene family AT5G61570 52.941 2.20e-114 335.0
Cien3g03834 . 37 536 Carbohydrate Esterase gene family AT5G51490 51.587 0.0 519.0
Cien3g03837 . 51 218 Carbohydrate Esterase gene family AT1G53830 32.544 4.30e-25 99.8
Cien3g03838 . 51 218 Carbohydrate Esterase gene family AT1G53830 34.32 7.44e-26 102.0
Cien3g03840 . 57 218 Carbohydrate Esterase gene family AT1G53830 34.969 1.68e-25 100.0
Cien3g03841 ACH 51 216 Carbohydrate Esterase gene family AT1G53830 33.133 3.26e-23 94.4
Cien3g03842 ACH 59 216 Carbohydrate Esterase gene family AT3G14310 22.785 2.23e-14 68.9
Cien3g03843 ACH 75 227 Carbohydrate Esterase gene family AT5G53370 34.356 5.52e-19 82.0
Cien3g03982 . 18 587 Carbohydrate Esterase gene family AT5G53370 63.435 0.0 760.0
Cien2g01257 . 30 118 Carbohydrate Esterase gene family AT3G16970 36.559 7.91e-11 55.5
Cien2g01258 . 30 118 Carbohydrate Esterase gene family AT3G16970 36.559 7.91e-11 55.5
Cien2g01259 . 30 104 Carbohydrate Esterase gene family AT3G16970 34.667 8.03e-08 46.2
Cien2g01260 . 30 104 Carbohydrate Esterase gene family AT3G16970 34.667 7.87e-08 46.2
Cien2g01261 . 30 104 Carbohydrate Esterase gene family AT3G16970 34.667 7.87e-08 46.2
Cien2g01378 . 1 342 Carbohydrate Esterase gene family AT5G16080 54.598 3.83e-121 350.0
Cien2g01517 . 495 702 Carbohydrate Esterase gene family AT5G36210 22.477 1.42e-06 50.1
Cien2g01567 . 15 408 Carbohydrate Esterase gene family AT5G23870 63.452 0.0 537.0
Cien2g01606 . 340 388 Carbohydrate Esterase gene family AT5G23870 38.462 4.65e-07 43.1
Cien2g01636 ACH 59 217 Carbohydrate Esterase gene family AT3G14310 25.786 4.88e-18 79.3
Cien2g01637 ACH 83 210 Carbohydrate Esterase gene family AT3G05610 30.233 6.47e-14 68.6
Cien2g01638 . 37 536 Carbohydrate Esterase gene family AT5G51490 53.77 0.0 556.0
Cien2g01684 . 1 359 Carbohydrate Esterase gene family AT5G61570 50.0 2.82e-109 322.0
Cien2g02797 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 66.167 0.0 606.0
Cien2g03033 ACH 28 427 Carbohydrate Esterase gene family AT5G15860 63.433 0.0 511.0
Cien2g03386 . 5 592 Carbohydrate Esterase gene family AT3G14310 65.563 0.0 763.0
Cien2g03388 . 3 592 Carbohydrate Esterase gene family AT3G14310 62.771 0.0 719.0
Cien2g03390 . 13 592 Carbohydrate Esterase gene family AT3G14310 63.527 0.0 724.0
Cien2g03391 . 17 592 Carbohydrate Esterase gene family AT3G14310 67.298 0.0 761.0
Cien2g03392 . 1 581 Carbohydrate Esterase gene family AT1G53840 56.507 0.0 656.0
Cien1g00717 ACH 69 536 Carbohydrate Esterase gene family AT5G36210 64.059 0.0 635.0
Cien1g00718 ACH 562 729 Carbohydrate Esterase gene family AT5G36210 76.19 2.39e-89 274.0
Cien1g00778 . 23 280 Carbohydrate Esterase gene family AT1G68620 35.401 1.49e-48 164.0
Cien1g01343 . 42 118 Carbohydrate Esterase gene family AT3G16970 29.762 5.10e-07 45.1
Cien1g01794 . 41 117 Carbohydrate Esterase gene family AT3G16970 29.63 8.90e-09 49.7
Cien1g01796 . 41 94 Carbohydrate Esterase gene family AT3G16970 42.593 2.87e-09 52.4
Cien1g01797 . 30 118 Carbohydrate Esterase gene family AT3G16970 34.409 1.46e-11 57.8
Cien1g02349 . 60 357 Carbohydrate Esterase gene family AT5G47500 48.495 7.81e-102 304.0
Cien1g02537 . 56 581 Carbohydrate Esterase gene family AT1G53830 40.672 5.78e-128 386.0
Cien1g02550 . 21 547 Carbohydrate Esterase gene family AT2G26440 62.362 0.0 665.0
Cien1g02552 . 7 525 Carbohydrate Esterase gene family AT4G33220 59.023 0.0 650.0
Cien1g02585 . 46 592 Carbohydrate Esterase gene family AT3G14310 64.364 0.0 715.0
Cien1g02586 . 59 592 Carbohydrate Esterase gene family AT3G14310 62.313 0.0 671.0
Cien1g02587 . 1 582 Carbohydrate Esterase gene family AT1G53840 60.307 0.0 706.0
Cien1g03085 . 1 314 Carbohydrate Esterase gene family AT1G19190 43.354 1.74e-87 263.0
Cien1g03086 . 11 314 Carbohydrate Esterase gene family AT1G19190 43.871 1.28e-85 258.0
Cien1g03087 . 51 314 Carbohydrate Esterase gene family AT1G19190 44.815 8.70e-76 233.0
Cien1g03088 . 2 314 Carbohydrate Esterase gene family AT1G19190 44.548 9.82e-92 275.0
Cien1g03541 . 9 264 Carbohydrate Esterase gene family AT3G09410 60.938 3.23e-109 322.0
Cien1g03546 . 9 427 Carbohydrate Esterase gene family AT3G09410 62.291 0.0 554.0
Cien1g04484 ACH 1 341 Carbohydrate Esterase gene family AT3G63010 75.072 0.0 547.0
Cien1g04544 . 2 571 Carbohydrate Esterase gene family AT4G02330 59.019 0.0 694.0