AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03034 ATGGATGACGTACCAGGATCCATGGGGACAAGTGCTGGTTTTGCCTTGAGACTTGGACAAACCATTTTTTCATCTGCTTCTCTTCTCTTCATGGCGTATGGTGTTCAGTTTTACAGCTATTCATCTTTCTGTTTCTTGGTGACAATCATGGGTTTGGTTATTCCATGGAGTTTCACATTGGCACTGCTTGATGGATACTCGGTTCTTGTAACATGCCCAGTTCGGCAAAAGGGTATACTGGTGATTATCGTTATTGGAGATTGGATGTTGTCGACTTTAACACTTGGTGCGGCTTCTTCAGGTGCTAGTGTGGTGGATATCTTGATGAGGGCAGATGGGTCTTTTTGCCCTTCGAATATATGTAGTCGATATCTTCTGTCGACCGTATTTGCTTTCTTGTCGTGGTTCTTATCCATGGGTTCTTCCTTGTTCAATCTATGGCTTCTTCCATCTTTGTGA 459 43.36 MDDVPGSMGTSAGFALRLGQTIFSSASLLFMAYGVQFYSYSSFCFLVTIMGLVIPWSFTLALLDGYSVLVTCPVRQKGILVIIVIGDWMLSTLTLGAASSGASVVDILMRADGSFCPSNICSRYLLSTVFAFLSWFLSMGSSLFNLWLLPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03034 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
Cien5g03034 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03034 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr2:55450514 Cien5g03034 Cien-Chr5:72649161 dispersed
Cien Cien-Chr5:72649161 Cien7g02306 Cien-Chr7:34549608 dispersed
Cien Cien-Chr5:72649161 Cien8g02956 Cien-Chr8:56969238 transposed