AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03046 ATGGCTTCATCTTCCAGTTACAGCCGTCTCTTCCATGCTCTACTGCTCATACATCTACAGATCTGCAGTTCCCGGAAAATCATTGAAACCCCGATGAAAAACGATCATAACGAAGAAAATCATATAACAATTTACGGGAAGAAGGAAGTTGATGATTTGGATCCGGCTTTAAAAGTGTTCTTCAATGTAAACGATTTATATATGGGCAAAAAAATGCAGATTTATTTCGCGACAAACGATCCATCCACAACTCCTCGGTTACTCGCTAGAGAACAAGCCGATTCAATACCATTCTCATCGTCAAAACTGCCGGAGCTTCTTGACTTTTTATCGTTGACCGGCGACTCACCACAAGCGAAAGCCATGGAGCAAACACTTAAACAATGTGAGCTTGAGCCGACACCCGGTGAGACCAGGTTCTGTGCTTCCTCGTTGGAATCGATGCTGGACTTGACACGTGGCATATTGGGTACCGACAAACTCAAGACGTTGACCACAAAGATCCATAATTTGACGGATTCCGGCTATACCCTTTTACAGGAGTACACGTTTTTAGAGAAGCCATTGGAGATTCATGTTCCTGATATGGTGGCTTGTCATACCATGGCGTATCCTTATGCGGTTTACTATTGCCATGGTCAAAAGGGGTATAACAGGGCTTTTGAGATTTCTTTAGGGGGTGAAAATGGAAATAGAATCGATGCTATTGCTGTTTGCCATATGAACACCTCCATGTGGGACCGTGACCACGTGGCGTTTCGGATTCTCGGAGGCCAGCCTGGCAGCTCGCCTGTGTGTCATTTTCTCCCGGCCGATAACATCATGTGGATCCCGTCGGTGTAG 843 45.55 MASSSSYSRLFHALLLIHLQICSSRKIIETPMKNDHNEENHITIYGKKEVDDLDPALKVFFNVNDLYMGKKMQIYFATNDPSTTPRLLAREQADSIPFSSSKLPELLDFLSLTGDSPQAKAMEQTLKQCELEPTPGETRFCASSLESMLDLTRGILGTDKLKTLTTKIHNLTDSGYTLLQEYTFLEKPLEIHVPDMVACHTMAYPYAVYYCHGQKGYNRAFEISLGGENGNRIDAIAVCHMNTSMWDRDHVAFRILGGQPGSSPVCHFLPADNIMWIPSV 280
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03046 280 SMART BURP-2 58 279 IPR004873 -
Cien5g03046 280 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 41 279 IPR044816 -
Cien5g03046 280 ProSiteProfiles BURP domain profile. 60 279 IPR004873 -
Cien5g03046 280 Pfam BURP domain 59 277 IPR004873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03046 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
66510 Cien5g03046 Cien9g02459
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr4:65815440 Cien5g03046 Cien-Chr5:72811307 dispersed
Cien Cien-Chr5:72811307 Cien5g03049 Cien-Chr5:72874069 proximal
Cien Cien-Chr5:72811307 Cien9g02459 Cien-Chr9:50131982 wgd