AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03076 ATGCACCAGCCAACAAGCTCCACCGTCACTATCGAACTCGCTGTTCGCAGATCTATCAGACCATTGAAAACCCCTCGAAAATTTGCGTTTGCACTTCTACTCCACGTACTTCAAGTATTTAACCGGCCGTTGGTCGGATTTTCCCCTGCTCGTCGTCTTCCACCGTCTTCCGTAGCCTCCGATGATATTGAAATCATAATCTGGGCATCATATTGGCTGGAAGTCGACATAATGTTTAAATACATATATGGTAGAAGGAGTGAGAGGCAAAGGAAGAAGTCATTAAGTCGTTTTTCAACTACCATCAATGAGCCTGTAATAGTTCAAGAAGATGACCATCATGTTCAAGATCATGGTGAACCTCATCAGGATGTGGTTGATACAGAAAATGTCATTGTTAATCCAGAAAATGAAGTTATGTTTGGTTATTTACATGAAACAGATCAATTAGTTGAAGAGACGACTCCATCAACAACAAGCATTGGAAAGAGGAAATTAAGAGAAGTAAAACGCATGCATGGAGTGAAAAACAAGAAAAGTGAGGGTTTAGGTTCATTAGTTGTGAATGATGAGACTGGGGGTGCTTTTTCTAGTGGTAATTATGCAGATGACGTGGTAATTAGTCCGAGGGAAGAACATGCTGAGGAACATGCTGATAAACATGATGATGAACATGATGAGGATCTCATGGATCTTGCAGACGATCATACGAAGCTTGTAAAAAACCCTTGCTCCTATTTGGAGAGGAAACACTGCACTACTCACCCCTCACCAATGGCGGCGGCTTCTTCTTCTCACCTTCAATTTCAGTCTCTCTCTTTTGCAAAAACCCTAAATCAATCTTCAAAGCCGATCACTCCCAAAACCTTAATTTCTTACAAACCCGGTTCCAAAACACTCGCTATCCGAGCCGTCATATCGCAAAATCCTGTGGAAACTCAGACATTTCAGCATTGCTTCACCAAAAAAGATGATGGCTATCTGTACTGTGAGGGTCTTAAAGTTCAAGAAGTCATGGAGGCCGTTGAAAGAAGGCCGTTTTATCTTTACAGTAAGCCTCAGATAACCAGAAACGTTGAGGCTTATAAGGATGCTTTGAAGGGTTTGAATTCGATCATCGGCTATGCTATTAAAGCCAATAACAACTTCCTGATATTACAACATTTGAAGAATTTGGGTTGTGGCGCTGTTTTGGTTAGCGGAAATGAGCTCAGATTGGCCATTCGCGCTGGCTTTGATCCTACCAAGTGTATTTTCAATGGAAACGGGAAGCTTTTGGAGGATCTTGTTCTTGCTGCACAAGAAGGCGTATTTGTTAACATCGACAGTGAATTTGATTTGGATAATATTGTATCCGCTGCAAGAATTGCTGGCAAGAAGGTTAATGTATTGCTTCGAATCAATCCTGATGTTGATCCTCAGGTCCATCCTTATGTTGCAACCGGGAACAAAAACTCCAAATTCGGTATAAGAAACGAAAAATTACAATGGTTTTTAGACGCCGTGAAGTCATACCCCGATGAACTTAAGCTAGTCGGGGCCCACTGCCATCTCGGATCCACCATTACCAAGGTCGACATTTTCAGAGACGCCGCATCCATTATGGTGAAGTTTATAGACGAAATTCGCGCACAAGGATTCGATATTAATTATTTAAATATTGGAGGTGGTCTTGGCATTGATTATTACCATACTGGCACTATCCTTCCTACACCTCGTGATCTCATTGACACGGTGCGGGAGCTTGTGTTGTCGCGAAATCTTAATTTGATAATTGAACCTGGAAGGTCGTTGATTGCAAATACGTGTTGTCTTGTGAACCGTGTCACGGGTGTTAAAACAAATGGCACGAAGAACTTTATTGTGATTGATGGTAGCATGGCTGAACTTATTCGTCCTAGCCTCTATGATGCTTATCAACACATAGATCTGGTTTCACCTCCACCACCTGATTCCGCGGTTTCCACTTTTGATGTTGTGGGCCCCGTTTGCGAATCGGCCGATTTCTTGGGAAAGGACAGGGACCTTCCGGCTCCAGCCAGTGGTTCTGGGCTTGTAGTTCATGATGCAGGTGCATACTGCATGAGCATGGCTTCAACTTACAACCTCAAGATGCGCCCACCTGAGTACTGGGTTGATGAAGATGGATCCGTGGCAAAAATCAGGCATGCGGAAACTTTTGAAGATCATATGAGATTCTTTGAGGGACTTTAG 2214 42.91 MHQPTSSTVTIELAVRRSIRPLKTPRKFAFALLLHVLQVFNRPLVGFSPARRLPPSSVASDDIEIIIWASYWLEVDIMFKYIYGRRSERQRKKSLSRFSTTINEPVIVQEDDHHVQDHGEPHQDVVDTENVIVNPENEVMFGYLHETDQLVEETTPSTTSIGKRKLREVKRMHGVKNKKSEGLGSLVVNDETGGAFSSGNYADDVVISPREEHAEEHADKHDDEHDEDLMDLADDHTKLVKNPCSYLERKHCTTHPSPMAAASSSHLQFQSLSFAKTLNQSSKPITPKTLISYKPGSKTLAIRAVISQNPVETQTFQHCFTKKDDGYLYCEGLKVQEVMEAVERRPFYLYSKPQITRNVEAYKDALKGLNSIIGYAIKANNNFLILQHLKNLGCGAVLVSGNELRLAIRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAASIMVKFIDEIRAQGFDINYLNIGGGLGIDYYHTGTILPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIDLVSPPPPDSAVSTFDVVGPVCESADFLGKDRDLPAPASGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVDEDGSVAKIRHAETFEDHMRFFEGL 737
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03076 737 Gene3D Alanine racemase 352 597 IPR029066 -
Cien5g03076 737 FunFam Diaminopimelate decarboxylase 588 731 - -
Cien5g03076 737 PANTHER DIAMINOPIMELATE DECARBOXYLASE 312 734 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Cien5g03076 737 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 354 600 IPR022644 GO:0003824(InterPro)
Cien5g03076 737 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 544 559 IPR022657 -
Cien5g03076 737 SUPERFAMILY Alanine racemase C-terminal domain-like 575 732 IPR009006 GO:0003824(InterPro)
Cien5g03076 737 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 395 407 IPR000183 GO:0003824(InterPro)
Cien5g03076 737 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 508 521 IPR000183 GO:0003824(InterPro)
Cien5g03076 737 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 691 704 IPR000183 GO:0003824(InterPro)
Cien5g03076 737 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 375 393 IPR000183 GO:0003824(InterPro)
Cien5g03076 737 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 590 609 IPR000183 GO:0003824(InterPro)
Cien5g03076 737 Hamap Diaminopimelate decarboxylase [lysA]. 332 735 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cien5g03076 737 PRINTS Diaminopimelate decarboxylase signature 481 490 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cien5g03076 737 PRINTS Diaminopimelate decarboxylase signature 618 636 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cien5g03076 737 PRINTS Diaminopimelate decarboxylase signature 393 410 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cien5g03076 737 PRINTS Diaminopimelate decarboxylase signature 701 723 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cien5g03076 737 SUPERFAMILY PLP-binding barrel 345 601 IPR029066 -
Cien5g03076 737 FunFam Diaminopimelate decarboxylase 352 597 - -
Cien5g03076 737 NCBIfam diaminopimelate decarboxylase 322 731 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cien5g03076 737 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 335 731 IPR009006 GO:0003824(InterPro)
Cien5g03076 737 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 375 393 IPR022653 -
Cien5g03076 737 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 601 691 IPR022643 GO:0003824(InterPro)
Cien5g03076 737 CDD PLPDE-III-DapDC 346 712 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03076 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:31303890 Cien5g03076 Cien-Chr5:73581871 dispersed
Cien Cien-Chr5:73581871 Cien7g02461 Cien-Chr7:37099370 dispersed
Cien Cien-Chr5:73581871 Cien7g02876 Cien-Chr7:71428827 transposed