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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03083 ATGTCCCCAAACTTTTCAATATCCGAAGAAGGTTCACCTTCACCTTTCACTCACCGCGGGTGGGCCCACAGGCCCACCCGCGGATCCCACGGCGGGTCATCTGACGGATCCTCAGAACCCACCTACTCTGAGCTCATGTCATTTTACAACAATAGCAAAAGATGGTCTTTCGATAGCGAGTCTTTAAGTTTTAGTCGCGATAGGGTTAGCCGGTCTAGCGGTAGGGTCTCGTCTTCTCCCTCCATTGATGTCCAACCGTGCGGTGTTTGCTCCAAGCTTTTGACCGAAAGGTCACACTGGGGGGCCCACAAAATGGCGGCCAATGGGCTTCCGGTGGTGGCGGTTTTAATGTGCGGACATGTTTATCATGCGGAGTGTTTAGAGAATATGACACCGGAGGTTAACAAGTATGATCCCGCGTGTCCCGTGTGTACTTTCGGGGAAAAAAAGGTTTTAAAATTGTCGGAAAAAGCGCGAGGGGAAATGGATTTGAAGGGTAAATTTGGTAAATTGAGGAAACGAGTGATTGATGGTGATTCGGTTTTGTTCGATAGGGTGAAAAGTAGAGGGCCTAGAATGGGGGCAAGAGTGAGGTTTTTCGCTTTTAAAAAGGTAGGCGTATGA 624 49.04 MSPNFSISEEGSPSPFTHRGWAHRPTRGSHGGSSDGSSEPTYSELMSFYNNSKRWSFDSESLSFSRDRVSRSSGRVSSSPSIDVQPCGVCSKLLTERSHWGAHKMAANGLPVVAVLMCGHVYHAECLENMTPEVNKYDPACPVCTFGEKKVLKLSEKARGEMDLKGKFGKLRKRVIDGDSVLFDRVKSRGPRMGARVRFFAFKKVGV 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03083 207 ProSiteProfiles Zinc finger RING-type profile. 87 145 IPR001841 -
Cien5g03083 207 PANTHER EXPRESSED PROTEIN 26 150 - -
Cien5g03083 207 SUPERFAMILY RING-U-box 80 145 - -
Cien5g03083 207 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 67 146 IPR013083 -
Cien5g03083 207 SMART ring-2 87 144 IPR001841 -
Cien5g03083 207 MobiDBLite consensus disorder prediction 1 40 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03083 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr4:76458555 Cien5g03083 Cien-Chr5:73695632 dispersed
Cien Cien-Chr5:73695632 Cien9g01116 Cien-Chr9:16461885 dispersed