AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03103 ATGGTGAGAGGAGTACACTTACAATCCTACAGATGCACTCTTTGCAACATGGAAGATGAAACTGTTGACCATGTTTTCTTCGACTGCAGTTTTTCCAAACAGCCCAATGGCCTGGGCTATGATTCTCCACGCAAAAACAACTTTCTAACACCACCACCGGCGCATATTAGCAGCAACAACCGTCGAGGAACGACTGTGCTCCTCCAGATGGATGTACTCTTCAATTCAATCGACGTCCGGGATTTGTTATCGTCACACGATCTAGACGACTCTTCGCCACTCTCCGCCCCCGATCTCCGCCTCCTCATCGACCGTCTCCAAGTCCGTTCACTCGACATTAAGTCCAAAGTCCACAATTACATACTCTCTCACAACGATGACTTCTCTGCCCTATTCTCTCGCTGCTCCGACGCCGTCATTAATTCCGAGCAACTATCCGATCAAGTGTCTAACCTCGTCAATCTCTTATCATCTAATCAACCGATCGATGTCAAGATCAAAGAAACAGTCGACGAGATTAGGAGGAAACGTGTTGAGTCGAAAGAGAAGAAGGAAGCGCTAGATTTAGTGAAGGCAGTGTTGAAATTGAGCCAAGAGTTGAGTGTGGTGGAGAATGATTTGATGGCGGGAAAGGTCGTTGAGGCTGCAGAAGCTCTTACGGACTTGAAAGTCGCTTTACGAGTAAGAGATAATGTGGAGGATCTCAGGGAAGAAAGAGAGCCGATGGTATTTGGTTTGCTAAGGAAGAAATACACAGATTGCTTCGAACAGATACAAGAATTGCTAGTAAAGTTCATGGAGAATGCAGTGAGATTCGATGAGCAGTCCAACTCAGTTTATGTCACAAATAGAATGGCCATGAATGACAATCAAGAAGTTGAGCTTTGTACCGTTGTGAAAGCAATGCATGTGGTTGGTATTCTTGATTATGGGCTTGCTAAAGTTGCAGACTTGATGACTAGACATGTGATAGCTCCTTCAGTGCGCTCTAGTTCTCATACTTTTTCTGTACAAGAACAAAGACTAGATTCTGGATATTTATCTGAAGTAGTTTTGAAGATAATTCCACCTTCTGATCCTCAGATTGAGAACATGGATGCTGAAACTATCTATTCTGGACTTAATGTGGTGATTCAATTTATATTTAACTTTATTTGCTTTCAAAATACTTCATGGATGCGATACTTTGGGAGATTGACATGGCCCCGTATGTCAGAATTGATTATTTCAAATTTCCTTTCAAAGATTGTTCCTAATGATGCTTCTAAACTTGCTGACTTTCAAACAACAAGACAACTCACATCTGACTTTGAGACATCTTTGAAAGAAGTTATGTTCATTTCATCTGAAGGGAAAGATGAAAGGTTGACTAATTTTGCTGATAATGTTGAAGTTCACTTTGCAATGAGGAAAAAAGTTGAGATTTTAGCAACAGCTAGAGACCTCCTTCTACATTCTGATTTTAATCTCCCTAAAGACTATTCAAGGAAAAATACAGAATTCAAAAATGGTGGAAACATAGACTTACTTTTTTCTTCTGAGAAATGTGTCATATCAGAAGCAGCTTCTAAACTAATGGAAGTCGTCCATCAAACACTCAAGGATGTTTGCTTGTCATCTGCAACAGTGGCTTTAGAATTCTACCATGCTGCTAGAGATGCTTTACTTCTTTATGAAGCTGTTATTCCTGTCAAGTTAGAAAGACAGCTGGATGGAATCAACCAGGTTGCTGTTCTTATTCATAATGATTGTCTATATTTATCACAAGAGATTCTTGGCCTTGCATTTGAGTATAAGTCGGATTTCCCAAGTTCCATGAAGGGAGCTATATTTATTGATTTGGGTGTAAGATACAAGCTAATGGCAGAAGAGATATTACAAAGACAAATACAACTCGTTAAACATAACTTAATGGAGGCGATTGATGGGGCAGATGGATTTCAAAATACACATCAACCAAAAAGATATGAATCTGCAAAATTCAGTATTGATCAGGTGGCTTTTATACTTGAGAAAGTTCACATAATATGGGGCCCACTTTTGCTTCCTTTAACATACAAAGGAAGCATGTGTAGTGTCATGGAGGCTGTTTGTTCTAGAATCACTAAAGATATACTCATGTTAGATGACATTGCAGCTGAAGAAACATTACAGCTTCAAAGACTAATTCATATGCTACTGGAAAACCTTTCTTCTTTAATGGAATCGCTGATTGCCATCAATCAGACAACAAAACCACAACAAAAATCATCTCCATCTATTAATCATCTAATTCCATCACTTCCTCGACTACGAATATTAGCAGATATGTTGGACATGCCTTTGAAGTCAATTACCGCCTCATGGGAAAGTGGTGAGCTGGCAAACTGCGGTTATACTTCATCTGAGGTGAGGGATTTTATCAGAGCAATATTTACGGATTCGCCCCTGCGGAAAGAATGCTTGTGGAGAATTGAAAATATCACATTTTAG 2472 39.77 MVRGVHLQSYRCTLCNMEDETVDHVFFDCSFSKQPNGLGYDSPRKNNFLTPPPAHISSNNRRGTTVLLQMDVLFNSIDVRDLLSSHDLDDSSPLSAPDLRLLIDRLQVRSLDIKSKVHNYILSHNDDFSALFSRCSDAVINSEQLSDQVSNLVNLLSSNQPIDVKIKETVDEIRRKRVESKEKKEALDLVKAVLKLSQELSVVENDLMAGKVVEAAEALTDLKVALRVRDNVEDLREEREPMVFGLLRKKYTDCFEQIQELLVKFMENAVRFDEQSNSVYVTNRMAMNDNQEVELCTVVKAMHVVGILDYGLAKVADLMTRHVIAPSVRSSSHTFSVQEQRLDSGYLSEVVLKIIPPSDPQIENMDAETIYSGLNVVIQFIFNFICFQNTSWMRYFGRLTWPRMSELIISNFLSKIVPNDASKLADFQTTRQLTSDFETSLKEVMFISSEGKDERLTNFADNVEVHFAMRKKVEILATARDLLLHSDFNLPKDYSRKNTEFKNGGNIDLLFSSEKCVISEAASKLMEVVHQTLKDVCLSSATVALEFYHAARDALLLYEAVIPVKLERQLDGINQVAVLIHNDCLYLSQEILGLAFEYKSDFPSSMKGAIFIDLGVRYKLMAEEILQRQIQLVKHNLMEAIDGADGFQNTHQPKRYESAKFSIDQVAFILEKVHIIWGPLLLPLTYKGSMCSVMEAVCSRITKDILMLDDIAAEETLQLQRLIHMLLENLSSLMESLIAINQTTKPQQKSSPSINHLIPSLPRLRILADMLDMPLKSITASWESGELANCGYTSSEVRDFIRAIFTDSPLRKECLWRIENITF 823
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03103 823 Pfam Centromere-kinetochore protein zw10, C-terminal 511 639 IPR048343 -
Cien5g03103 823 Pfam Centromere-kinetochore Zw10 N-terminal 106 199 IPR009361 GO:0000278(InterPro)|GO:0000775(InterPro)|GO:0005634(InterPro)
Cien5g03103 823 PANTHER CENTROMERE-KINETOCHORE PROTEIN ZW10 73 820 - GO:0006888(PANTHER)|GO:0007094(PANTHER)|GO:1990423(PANTHER)
Cien5g03103 823 Pfam ZW10 C-terminal helical domain 662 818 - -
Cien5g03103 823 Gene3D - 616 822 IPR046362 -
Cien5g03103 823 Pfam Centromere-kinetochore protein zw10, middle domain 247 483 IPR048344 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03103 K11578 protein transport protein DSL1/ZW10