AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03106 ATGACGATTACAACCCCCGGCTTCCCATCTCCGCCACCATTTCACCATTCGACCACCCACCCACCTCCATACAAACACCCTCCTATCATAACTCTTCAAAACCCAACAAAACCCCATGACAATTCCATAAAATCCCTAAAGAATTCCGGGTTTTTATCAGCAATTGGAAACGCAATTGAAGACCAAGAGTATCGGAAAGCTAGGGCTGAGGTTATCCGGAAAGGAACAGGGCTAGAGGGTTACTCAATTGAGGGTCTTTCAATTGGGGGCCATGAAACTTGTGTTATCGTTCCTGAATTGAAGTGCGCATTTGATATCGGAAGGTGTCCTGCTAGAGCCGTTGCCATGAATTTCTTGTTTATCACTCATGCTCACCTCGATCACATTGGTGGGCTACCCATGTATGTAGCGACTCGTGGCTTGTACAGTTTGAGTCCTCCGACTGTATTTGTCCCTCCTGCCATTAAAGAAGATGTTGAAAATTTGATCGAGCTTCATAGGAAGATGGGAATGGTGGAGTTGAATCTTGATTTGGTTGCATTGGATGTAGGAGAAACATACGAGTTACGAAATGACCTTGTTGTACGCCCTTTTAAAACTCACCACGTGATACCCAGTCAGGGTTATGTTATTTACTCGGTTCGCAAGAAGCTAAAAAAGCAATACGCTCATTTAAAAGGAAGGGAGATTGAGAAAAAGAAGAAATCCGGTGTTGAGATCACTGATATTATATTGTCACCGGAGGTGGCATTCACGGGAGATACAACTTCTGATTTTCTACTTGATCCAAGAAGTTCCGATGCCTTAAGGGCCAAAGTCCTTATAACCGAGGCGACGTTTTTGGACGATAAATGCGACATTGAGCATGCACGAGAGCATGGTCACATGCATATTGATGAGATCATGGAGCATGCTAAGTGGATTCGAAACAAAGCCATTCTTTTGACTCATTTTTCTTCACGCTACCATGTCGAGGAAATTCGTGAAGCTGTAACAAAATTGAAGTCAAAGGTTTCAGCCAAAGTGGTCCCACTTACAGAAGGTTTTAGATCAATGTACTCATCATAG 1068 43.45 MTITTPGFPSPPPFHHSTTHPPPYKHPPIITLQNPTKPHDNSIKSLKNSGFLSAIGNAIEDQEYRKARAEVIRKGTGLEGYSIEGLSIGGHETCVIVPELKCAFDIGRCPARAVAMNFLFITHAHLDHIGGLPMYVATRGLYSLSPPTVFVPPAIKEDVENLIELHRKMGMVELNLDLVALDVGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYAHLKGREIEKKKKSGVEITDIILSPEVAFTGDTTSDFLLDPRSSDALRAKVLITEATFLDDKCDIEHAREHGHMHIDEIMEHAKWIRNKAILLTHFSSRYHVEEIREAVTKLKSKVSAKVVPLTEGFRSMYSS 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03106 355 Gene3D - 81 350 IPR036866 -
Cien5g03106 355 SUPERFAMILY Metallo-hydrolase-oxidoreductase 115 332 IPR036866 -
Cien5g03106 355 PANTHER TRNASE Z TRZ1 40 349 - -
Cien5g03106 355 Pfam Beta-lactamase superfamily domain 115 318 IPR001279 -
Cien5g03106 355 MobiDBLite consensus disorder prediction 1 27 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03106 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr2:86914010 Cien5g03106 Cien-Chr5:74522887 dispersed