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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03119 ATGTCGTTGGCCGTCGAAGCTGTTTCGAGTTCCACTAACATGGGACTTGAAGATAATAAAGAAGGAGACAAGAATGGAGTCGACGACAATGGAGACGAATCCTCCATTTACGAGACTGAAGATGAAGGAGAAGATACAGAAAGTAGTAAAATCGATTTGGGTCCTCAATACACCCTCAAAGAACAATTCGAGAAAGACAAGGATGACGAGAGCTTGAGAAAATGGAAAGAACAGTTACTTGGAAATGTCGACATTAATGCTGTTGGAGAATCACTAGAGCCAGAAGTGAAGATCGTCAGCCTTTCGATACTATCTCCAGGAAGATCTGACATTGTTCTTGCGATACCTGAAGATGGAAAACCGAAAGGGCCATGGTTTACACTGAAAGAAGGCTGTCGTTACAGTCTTCGATTCTCATTTCAAGTTAGTCGTAACATTGTTTCTGGTTTAAAGTACACCAACAACGTATGGAAAACTGGCGTGAAGGTGGATGGTGTGAAACAGATGCTTGGTACTTTTAGTCCCCAACAAGAAGTATACACTTATGACATGCCAGAAGAGACTACCCCTTCTGGTTATTTTGCAAGAGGTTCTTATTCTGCTAAAACTAAGTTTGTTGATGATGATGGCAAATGTTACTTGGAGATCAACTATACGTTTGATATTCGGAAAGAGTGGGCGAGTGTTGAAGCACCTAAAACACTATAA 708 41.1 MSLAVEAVSSSTNMGLEDNKEGDKNGVDDNGDESSIYETEDEGEDTESSKIDLGPQYTLKEQFEKDKDDESLRKWKEQLLGNVDINAVGESLEPEVKIVSLSILSPGRSDIVLAIPEDGKPKGPWFTLKEGCRYSLRFSFQVSRNIVSGLKYTNNVWKTGVKVDGVKQMLGTFSPQQEVYTYDMPEETTPSGYFARGSYSAKTKFVDDDGKCYLEINYTFDIRKEWASVEAPKTL 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03119 235 Pfam RHO protein GDP dissociation inhibitor 39 225 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cien5g03119 235 Gene3D Coagulation Factor XIII, subunit A, domain 1 48 228 IPR024792 -
Cien5g03119 235 SUPERFAMILY E set domains 33 226 IPR014756 -
Cien5g03119 235 MobiDBLite consensus disorder prediction 33 47 - -
Cien5g03119 235 PANTHER RHO GDP-DISSOCIATION INHIBITOR 32 226 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Cien5g03119 235 MobiDBLite consensus disorder prediction 17 31 - -
Cien5g03119 235 FunFam Rho GDP-dissociation inhibitor 1 49 228 - -
Cien5g03119 235 MobiDBLite consensus disorder prediction 1 16 - -
Cien5g03119 235 PRINTS RHO protein GDP dissociation inhibitor signature 163 178 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cien5g03119 235 PRINTS RHO protein GDP dissociation inhibitor signature 205 222 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cien5g03119 235 PRINTS RHO protein GDP dissociation inhibitor signature 146 162 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cien5g03119 235 MobiDBLite consensus disorder prediction 1 55 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03119 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
66522 Cien5g03119 Cien9g02385
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr3:16403585 Cien5g03119 Cien-Chr5:74849451 transposed
Cien Cien-Chr8:22305217 Cien5g03119 Cien-Chr5:74849451 transposed
Cien Cien-Chr9:41786940 Cien5g03119 Cien-Chr5:74849451 transposed
Cien Cien-Chr5:74849451 Cien9g02385 Cien-Chr9:48618006 wgd