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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03125 ATGGCCATAACCGTAACCTCCGCCCTCGTTATATTTTTTCATTTGCTTGTGTATCATTTTGACATATCATATGGTCGAATGTGTTCACAACACATATTCACATCCGATAGACTCTACAATTCTTGTAGGGATCTTCCGCATTTATCTGCAAGTCTTCATTGGACCTACAACTCATCAACAGGCGTAGCACGGATCGCGTACCGGGCTAGGCAGGGCCCACGCGGCTGGGTTGCATGGGCCATTAACCCAAACCAGATAGGCATGGTTGGGTCAGAAGCACTTGTGGCTTTTCATGATGGTATTGGGAGCATGACGGTGTATACAACTTTGATAGCTAGTTATAGCCCATCAATGGTACCGGGAAATCTTAGCTTTCAAGTTTCGGGTTTATCTGCTGAGTCAACTATTAATGAGATTACTATTTTTGCTGATGTGGGCCCTTTTGAAAGTGGGTCCCTTGTTAATCAAGTGTGGCAAAGTGGGAATTTGGTTTTGAATGGTGTTCCTCAAATGCATGCGATTTCACAACAGAATCTTCAGTCGACGGGGGAGATCGATTTCTTGTATAATTAA 573 43.8 MAITVTSALVIFFHLLVYHFDISYGRMCSQHIFTSDRLYNSCRDLPHLSASLHWTYNSSTGVARIAYRARQGPRGWVAWAINPNQIGMVGSEALVAFHDGIGSMTVYTTLIASYSPSMVPGNLSFQVSGLSAESTINEITIFADVGPFESGSLVNQVWQSGNLVLNGVPQMHAISQQNLQSTGEIDFLYN 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03125 190 CDD DOMON-CIL1-like 39 188 IPR045265 -
Cien5g03125 190 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 8 189 - -
Cien5g03125 190 ProSiteProfiles DOMON domain profile. 48 161 IPR005018 -
Cien5g03125 190 Pfam Protein of unknown function (DUF568) 88 187 IPR045265 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03125 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
64389 Cien1g02941 Cien5g03125
66525 Cien5g03125 Cien9g02375
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr1:100765925 Cien5g03125 Cien-Chr5:75013585 dispersed
Cien Cien-Chr5:75013585 Cien9g02376 Cien-Chr9:48445561 dispersed
Cien Cien-Chr5:75012176 Cien5g03125 Cien-Chr5:75013585 tandem