AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03136 ATGGAATCAAACATCGAAGAAGCTCTTATCGCAAAAGAGAACGCAGAAAAACTATTCACAGTAAAAGACTTCACAGGTGCAAAACACTACGCCTTAAAAGCTCAAGCAATATGCCCACAACTCGAGGGCATTTCACAAATGGTGGCCACTTTTGAAATATACGCAGCAACTGTAACAAAAATAAACGGTGAAATCGACTTATATCAAGTTCTTGGATTAAACCCATCATCCGACAAATCATCACTCAAGAAACAATACAAGAAAATGGCGGTTCTTCTTCACCCTGATAAAAACAAAACCATGGGAGCAGATGAAGCTTTTAAACTTGTTTCAGAAGCATGGAGTGTTCTTTCTGATAACACAAAAAGAAACTTGTACGATGTTAGAAGAAATAAGCACTTAACCACTTCAGCTTCAAGACTTGACACATTCTGGACTGTTTGCACTTCATGTCGTGTTCAGTATGAATATTTAAGAAAATACGTGAATAAACGACTTTCATGTAAAAATTGTCGTGGGGTTTTTGTAGCTGTTGAAACGGGGTCCGCCCCTGTGACTTATTGCCCTTGGTCTTATACAACAACTGAAAATGGATATGGAAATCATTCATACAACGGTTATAATCCTTCTACTTATATACAAAATTCATCGGTATCTTTTACAGGAGACGGGTCATCTGGGTTTCATTCAGAATACACAAAAAATCTGTCTTTTCAATGGAATATGCCACCTGGCACGTTGACTAGTCAAGATCCGAATCTTGTTCATAAACCAAACGGAAGGGCAAAACCGTCCACAAAGGCGAATTTAAATAATTCGAATCATTCGAATTATAATGAAGTCCCGGTTGTTAGGCTTGGAAGGCCTCCGAAAAAGAGAAAAATCGAAGACGTGACGCAAAATGTAAACGGGGAAATGTTGTATAAAACGGACGCTGACGTGGCGGCGAGTAACGGGCATGTCGGGAATGTCTATTTTGCCCCTGTTATTGATGCAAGAAAGTTGTTGATTGAGAAAGCGAGAACGCTAATCCGGTTAAAGTTGGACGAAATGAAGTTAGCTTCAAAGACGGTTAAGTCCCTGAAGAAAACTCCGATGCCAATAACGGTCCCTGATCCCGATTTTCATGATTTTGACATGGATCGATCCGAAGAAGTTTTTAAACCGAAACAAATATGGGCGATTTACGATGAAGAAGACGGAATGCCACGTTTGTATTGTTTAATCCGCCAGGTCATCTCTTTAAAACCGTTTCAAGTTTACATAAGTTACCTAAACTCAAAAACCGATTCGGAATTCGGGTCCGTGAAATGGATCGAATCGGGTTTCACGAAATCTTGCGGAAGCTTCCGGGTGTTTCATTCCGACATGGTTGACCAAGTCAACATATTTTCTCACCTTTTGGGACGTGAGAAGGCGGGTCGAGGCGGGTGTGTGAAAATCTACCCGAAAAGTGGCGACATTTGGGCGGTTTATAGAAATTGGTCGGTTAATTGGAACCGAAAAACACCGAAAGAAGTGAGACACCAATATGAGATGGTGGAGGTTGTAGAGGATTATTCCGAAGAGCTTGGAGTTTGTGTGACAAATTTGGTTAAATTAAAAGGATATAAAACGGTTTATAAAAGAAACGATGATTTAACAAATGGAAGATTCTGGATTCCGAGAAGAGAAATGTTGAGATTTTCACATCAAGTTCCGTCGTGTTTGCTTAGAGGTCAAGCGCTTAATTTGCCAGATGGGTGTTGGGATCTTGACCCGGCTGCAACTCCTGAAGAGCTTTTGAGGGCGGCCATGGAAGATGATAATGAGAAAGTTGATGATATTAAGATTTAA 1836 40.36 MESNIEEALIAKENAEKLFTVKDFTGAKHYALKAQAICPQLEGISQMVATFEIYAATVTKINGEIDLYQVLGLNPSSDKSSLKKQYKKMAVLLHPDKNKTMGADEAFKLVSEAWSVLSDNTKRNLYDVRRNKHLTTSASRLDTFWTVCTSCRVQYEYLRKYVNKRLSCKNCRGVFVAVETGSAPVTYCPWSYTTTENGYGNHSYNGYNPSTYIQNSSVSFTGDGSSGFHSEYTKNLSFQWNMPPGTLTSQDPNLVHKPNGRAKPSTKANLNNSNHSNYNEVPVVRLGRPPKKRKIEDVTQNVNGEMLYKTDADVAASNGHVGNVYFAPVIDARKLLIEKARTLIRLKLDEMKLASKTVKSLKKTPMPITVPDPDFHDFDMDRSEEVFKPKQIWAIYDEEDGMPRLYCLIRQVISLKPFQVYISYLNSKTDSEFGSVKWIESGFTKSCGSFRVFHSDMVDQVNIFSHLLGREKAGRGGCVKIYPKSGDIWAVYRNWSVNWNRKTPKEVRHQYEMVEVVEDYSEELGVCVTNLVKLKGYKTVYKRNDDLTNGRFWIPRREMLRFSHQVPSCLLRGQALNLPDGCWDLDPAATPEELLRAAMEDDNEKVDDIKI 611
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03136 611 MobiDBLite consensus disorder prediction 264 280 - -
Cien5g03136 611 SUPERFAMILY Chaperone J-domain 55 131 IPR036869 -
Cien5g03136 611 SMART dnaj-3 65 122 IPR001623 -
Cien5g03136 611 MobiDBLite consensus disorder prediction 260 280 - -
Cien5g03136 611 CDD DnaJ 66 119 IPR001623 -
Cien5g03136 611 Gene3D DnaJ domain 55 149 IPR036869 -
Cien5g03136 611 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cien5g03136 611 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cien5g03136 611 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cien5g03136 611 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Cien5g03136 611 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cien5g03136 611 Pfam DnaJ domain 66 127 IPR001623 -
Cien5g03136 611 Pfam Domain of unknown function (DUF3444) 366 574 IPR024593 -
Cien5g03136 611 PANTHER BNAC03G44070D PROTEIN 1 590 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03136 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
64396 Cien1g02995 Cien5g03136
66527 Cien5g03136 Cien9g02365
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr2:58016343 Cien5g03136 Cien-Chr5:75251805 dispersed
Cien Cien-Chr3:95673631 Cien5g03136 Cien-Chr5:75251805 dispersed
Cien Cien-Chr5:30111478 Cien5g03136 Cien-Chr5:75251805 dispersed
Cien Cien-Chr5:75251805 Cien7g02888 Cien-Chr7:72117831 dispersed
Cien Cien-Chr6:80828843 Cien5g03136 Cien-Chr5:75251805 transposed
Cien Cien-Chr7:6433383 Cien5g03136 Cien-Chr5:75251805 transposed
Cien Cien-Chr7:7355086 Cien5g03136 Cien-Chr5:75251805 transposed
Cien Cien-Chr1:80758914 Cien5g03136 Cien-Chr5:75251805 wgd
Cien Cien-Chr5:75251805 Cien9g02365 Cien-Chr9:48083311 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g01045 ACH 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.028 3.71e-09 55.5
Cien9g02365 ACH 98 206 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.945 7.56e-14 70.5
Cien8g02244 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.39 5.44e-26 107.0
Cien8g02246 . 7 138 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.098 2.60e-22 90.5
Cien7g00560 . 10 200 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.333 4.43e-28 112.0
Cien7g00622 . 71 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 45.455 1.51e-12 64.7
Cien7g02888 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.317 4.53e-21 92.4
Cien6g00147 . 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.878 4.01e-10 59.7
Cien6g02010 . 7 203 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.139 5.40e-27 110.0
Cien5g01845 ACH 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.102 6.57e-43 146.0
Cien5g02344 . 7 269 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 47.097 1.60e-91 277.0
Cien5g02905 . 33 165 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 49.64 3.22e-36 136.0
Cien5g02907 . 17 164 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT1G62970 51.678 1.35e-42 165.0
Cien5g02908 . 181 421 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 38.435 3.36e-48 174.0
Cien5g03136 ACH 18 221 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.824 1.05e-29 117.0
Cien4g01933 . 46 138 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.456 8.53e-07 50.4
Cien3g02198 . 58 269 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 31.05 6.00e-19 87.4
Cien3g03975 ACH 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.314 2.01e-29 117.0
Cien2g01099 . 14 230 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.874 7.25e-38 135.0
Cien2g01524 ACH 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.589 1.22e-29 117.0
Cien1g01760 . 7 218 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.472 1.33e-29 115.0
Cien1g02172 ACH 64 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.356 1.96e-09 56.2
Cien1g02995 ACH 98 297 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.851 9.06e-16 76.3