AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03165 ATGGCAGCGGTCGGAGCCTTGAAGCCACCTCATTGCTTCTCTTCCTCCGGCATTGTTGCCAATAGGAGTCACCTCCGTTCTTCGTCAACTTTTCGGAGCTTATCGTTTGCCTCGTCTCATCTGTCCGGCGAGAAGGTGACTTCAGTATCATCCGTTCGACAACGCCGTTGTGGAGGTAGAACTTCGGTGATTGTTTCGCCGAAAGCTGTTTCCGATTCCAAAAATTCGCAGACATGTCTTGATCCTGACGCTAGTCAAAGTGTATTGGGGATAATACTTGGAGGTGGAGCTGGTACACGTCTCTACCCTTTAACAAAGAAGAGAGCAAAACCTGCTGTTCCATTAGGAGCAAACTACAGGCTTATTGACATTCCTGTCAGCAACTGTTTAAACAGCAACATATCAAAGATTTATGTTCTCACACAGTTCAATTCTGCATCACTCAATCGCCACCTGTCACGTGCTTATGCAAGTAACATGGGTGGTTACAAGAACGAAGGGTTTGTTGAAGTCCTTGCTGCTCAACAAAGCCCCGAAAATCCAAACTGGTTTCAGGGTACTGCTGATGCTGTAAGGCAGTACTTATGGCTATTTGAAGAGCATAATGTTTTAGAGTTTCTAATTCTTGCTGGAGATCATTTATACCGTATGGATTATGAGAGATTTATTCAAGCTCATAGAGAAACCGATGCTGACATCACTGTAGCAGCTTTACCAATGGATGAAAAACGTGCAACTGCATTTGGACTAATGAAGATTGATGAAGAAGGGCGTATAATTGAATTTGCAGAAAAACCAAAAGGAGAGCAATTAAAAGCTATGAAAGTTGATACCACAATTCTAGGGCTTGATGAAGAGAGAGCTAAAGAAATGCCTTATATTGCTAGTATGGGGATTTATGTTGTTAGCAAAGATGTGATGTTGGATTTGTTGAAAGATAAGTTTCCTGGAGCTAATGATTTTGGAAGTGAAGTTATTCCTGGCGCTACATCTATTGGCCTAAGAGTACAAGCTTACCTTTATGATGGATATTGGGAAGATATTGGTACCATTGAGGCTTTCTACAATGCCAATCTGGGAATCACCAAAAAGCCAGTCCCGGATTTCAGTTTTTATGATCGTTCATCTCCTATTTACACCCAACCTCGATACCTTCCTCCTTCCAAGATGCTTGATGCTGATGTCACCGATAGTGTTATCGGTGAAGGATGTGTCATTAAGAACTGCAAAATCCATCATTCTGTTGTTGGTCTTCGATCTTGCATAGCTGAAGGTGCAGTCATTGAAGATTCGTTGCTAATGGGAGCAGATTATTACGAGACGGATGCTGACAGGGAGTTACTTGCTGCAAAAGGTAGCGTTCCAATTGGTATTGGAAAGAACACTCATATCAAAAGAGCGATTATTGACAAAAATGCTCGTATAGGAGACAATGTTAAGATTATAAACAGCGATAATGTTCAAGAAGCAGCAAGGGAAACAGATGGGTATTTTATAAAAAGCGGAATTGTGACGGTTATCAAAGACGCATTGATCCCATCTGGCAGCATAATCTAG 1557 41.81 MAAVGALKPPHCFSSSGIVANRSHLRSSSTFRSLSFASSHLSGEKVTSVSSVRQRRCGGRTSVIVSPKAVSDSKNSQTCLDPDASQSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDEERAKEMPYIASMGIYVVSKDVMLDLLKDKFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIAEGAVIEDSLLMGADYYETDADRELLAAKGSVPIGIGKNTHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGSII 518
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03165 518 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 68 383 IPR029044 -
Cien5g03165 518 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 183 191 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Cien5g03165 518 FunFam Glucose-1-phosphate adenylyltransferase 69 383 - -
Cien5g03165 518 CDD LbH-G1P-AT-C 386 512 - -
Cien5g03165 518 CDD ADP-Glucose-PP 99 348 - -
Cien5g03165 518 FunFam Glucose-1-phosphate adenylyltransferase 384 518 - -
Cien5g03165 518 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 54 518 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Cien5g03165 518 SUPERFAMILY Nucleotide-diphospho-sugar transferases 87 479 IPR029044 -
Cien5g03165 518 SUPERFAMILY Trimeric LpxA-like enzymes 381 518 IPR011004 -
Cien5g03165 518 Gene3D Hexapeptide repeat proteins 384 518 - -
Cien5g03165 518 Pfam Nucleotidyl transferase 90 363 IPR005835 GO:0009058(InterPro)
Cien5g03165 518 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 295 305 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Cien5g03165 518 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 94 113 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Cien5g03165 518 NCBIfam glucose-1-phosphate adenylyltransferase 88 482 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03165 K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:76496959 Cien8g01465 Cien-Chr8:22938420 dispersed