AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03173 ATGAGAGAAGAAGGTTTTAGCTCATCGGGTGACCCATTCCTTTCCCCCAATTCTCCATCTCTTCCTCCGCCTCCTCCTACCGCTGCTGCAAGTTCGGCTGGGGCATCATCACCAGCTGTTCCCACCAATGCTGGCAGTACAGATTGGTTAGGTCATGGTCATGGATCCAAAGCAGGTTCTTTATCTCGAATTAGTTCACAGCCCACATGGATTTCATTAAGCACAAGTGCTCATGGTTCAGCTCTTGGCTCCTCTCAACCTTCATGTAGACCATGGGAAAGGGGCGATCTTCTAAAAAGACTGTCCACATTCAGACCCGCAAATTGGTTTGGAAAACCTAAGGCTGCTAGTTCACTTGCCTGTGCCGGAAGAGGCTGGATGAATGTGGATGTTGATAAGATTCAATGCGAGTCTTGTGGTGCAAACTTAAAATATAATGCACCAGATTCCTTTTCTACCCCTCATGGTGAAGATTTTGGCAATCAACTTGATGAAGGACACAATGTTACTTGTCCTTGGAGAGGAAATAGTTGTGCTGAAAGTTTAGTCCAATTCCCTCCTACCCCTCCTTCAGCTTTAATAGGAGGTTACAAGGACCGCATTGATGGACTTCTTCAATTTCCATTTTTACCCCTAGTGGCTCCTTCAGCACTTGACCAGATGAAGGTTTCAAGAGGTCCAGAAATCGATCGGTTTCTGGCTCAATCTGATATGGAAAACTCCAAAGACGTGTTATGCATATATTCACGTGCACAAAATTTGATAAGTCTTTGTGGATGGGAGCCGAGGTGGCTTCCAAATGTTCAAGATTGTGAAGAAAATTCTGCTCAATCAGCTAGAAATGGTGGTTCTTTTAGTCCTATTAAAGATCACAAAAAAGATTCTTTAAAGAACGAAAGTAGATCGCCTTTATTGGATTGCAGCTTATGTGGGGCCACAGTAAGAATCTTGGACTTCATTCATGTCAACCGTCCTTCCCGTTTTGCCCCTACCAACATCGATGTCCCTGAAACAAGTAAAAAGATTTTAATCACACGTGGAATAAGTGCAGCAAGTGGAATCAGTGGGTGGGTTGAAGAACATACAGAAGACATTGATGAAGCTGCAACTACAGGACAAAAAAGACCCTTATCCGACTTATACCAAGACCCAAATCTCGGGCAGGCAGCGGGCAGCGAGGTCGGAAACCGGGCAGCATCGTATGAATCCCGAGGTCCAAATGAAGGTGGGAGTACTGTCGATAGGCCACATGGGATCATTGATAGTGTTGAAGGTGTTGTCATTGACCGTGATGGTGATGAAGTCAACGATAGCAAAATGTCTTATAAATTTGCACGTGTGTCTTACAGAAGAGACTCATCTGGTGCGGGTCCCAGCCGGGTTTCGTATTTTGAAAATGACAGAACTGCCCCTGTTACAAAAGATTCAGCTAGAGCTTCTTCTGTTATTGCAATGGATACATATTGTCATAGTGATGATGATAATGATTCCATGGAAAGTGTCGAGAATCATCCCGGATATGGAGACGAGGTTAATTACCCTCAGGGACAAAATAGCACGAATGATGAGGAGGTTTTGAATGTTGTGGGAAAAGACGGTTTTACCCTTGCGGTTAGTGGAGGGAGTGTGGGAATGGGAGCGAGTCATGAAGCGGAGATACATGGGTCGGACGGTTTGATTCGTAGGACGGGAAGTGTTGTTGGTGACATGGAAGGGGGTACGGGTGTGAGTGTGACCGAGAACCAAGGGCAAACCGGTAATTTTGTCCCGGGAGTGACCGAGAGTCAAACGGATAGTGATGTTAATCTTTTACCCCATGAGCAAAGTTCTCACCCTTCTCTTTCTTGTAATGCGGTTGTATGTTCGGGTTTTGAAGCATCGAGAGATGAAGTGACTAATGATGAATGTGGATACCCAAATTACCCTCCTGCAAATGGGCTAGGGCCTCCAAATGGGGAAAGCAACTTTGAAGAACCAGTGGAGTTTGATCCAATCAAACATCATAATCTTTACTGCCCTTGGGTTAATGGAAATGTGGCTGCAGCTGGTGTGGGTGTGGGCCCCACTTCAAGTGGTAGTGGTTTAGCTCTTTGTGGGTGGCAGTTGACTTTAGATGCTTTAGATGGATTTCAAGGCTCTGAACCCAATCAGACCGTTGAGTCTGAATCAGCTGCTTCTCTTTACAAGGATGATCATGATCATCAAGTTTCTGGTCGAAAACTCATGGCACGGCATTCGTTCAATAAAAGCCATGGCTAA 2259 45.24 MREEGFSSSGDPFLSPNSPSLPPPPPTAAASSAGASSPAVPTNAGSTDWLGHGHGSKAGSLSRISSQPTWISLSTSAHGSALGSSQPSCRPWERGDLLKRLSTFRPANWFGKPKAASSLACAGRGWMNVDVDKIQCESCGANLKYNAPDSFSTPHGEDFGNQLDEGHNVTCPWRGNSCAESLVQFPPTPPSALIGGYKDRIDGLLQFPFLPLVAPSALDQMKVSRGPEIDRFLAQSDMENSKDVLCIYSRAQNLISLCGWEPRWLPNVQDCEENSAQSARNGGSFSPIKDHKKDSLKNESRSPLLDCSLCGATVRILDFIHVNRPSRFAPTNIDVPETSKKILITRGISAASGISGWVEEHTEDIDEAATTGQKRPLSDLYQDPNLGQAAGSEVGNRAASYESRGPNEGGSTVDRPHGIIDSVEGVVIDRDGDEVNDSKMSYKFARVSYRRDSSGAGPSRVSYFENDRTAPVTKDSARASSVIAMDTYCHSDDDNDSMESVENHPGYGDEVNYPQGQNSTNDEEVLNVVGKDGFTLAVSGGSVGMGASHEAEIHGSDGLIRRTGSVVGDMEGGTGVSVTENQGQTGNFVPGVTESQTDSDVNLLPHEQSSHPSLSCNAVVCSGFEASRDEVTNDECGYPNYPPANGLGPPNGESNFEEPVEFDPIKHHNLYCPWVNGNVAAAGVGVGPTSSGSGLALCGWQLTLDALDGFQGSEPNQTVESESAASLYKDDHDHQVSGRKLMARHSFNKSHG 752
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03173 752 MobiDBLite consensus disorder prediction 275 299 - -
Cien5g03173 752 Pfam C3HC zinc finger-like 91 208 IPR012935 GO:0008270(InterPro)
Cien5g03173 752 MobiDBLite consensus disorder prediction 369 417 - -
Cien5g03173 752 MobiDBLite consensus disorder prediction 490 516 - -
Cien5g03173 752 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 752 - GO:0005634(PANTHER)
Cien5g03173 752 MobiDBLite consensus disorder prediction 1 62 - -
Cien5g03173 752 MobiDBLite consensus disorder prediction 30 44 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03173 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr2:89122989 Cien5g03173 Cien-Chr5:76623273 dispersed