AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cien5g03177 | ATGGAAGACGATCACTACAATGCTCTCTCTCATCAAGACTCCGATCTTGATCTCAGCTTCACCAGCTCCACCTCCACCTCCATCGCCACCACCAGTAGTGCTCGATCAAGTCTTGCTCGTTCCAGTTTATGCTTGAGCTTCAATGATCGCATCTCCTCCGTATCCGGGGTGACACCCTCCACTGAAATCCCCAACCTTCACTCTCGTCCCCACCGGAAATCCGATGCGAACTGGTCCGCGATAAGAGCTGCCACTAATCTATCCTCCGACGGCACGCTCCACCTCCGCCACTTCAAGCTGGTTCGCCATGTCGGATCTGGAAATCTCGGCCGGGTTTTCCTTTGCCGTCTCCGGGATTACGATCATGCGAGTTTTGCTCTCAAGGTTGTTGATAACAACTCGCTCACCTCGAAGAAGTTGTCACATGTGCAAACGGAAGCTCGGATTCTGTCATCGCTAGACCACCCGTTTCTTCCTACGCTTTATGCTCACCTTGAAGTCTCTCATTACACTTGCTTCCTCATTGATTTCTGTCCCAACGGCGACCTTCATTCGTTGCTCCGGAAGCAACCTAACTACCGGCTACCTATTGATTCGGTTAGGTTCTTCGCCGCTGAGGTTTTGGTTGCTCTCGAATATCTCCATTCACTTGGGATCGTATACCGCGATTTGAAGCCGGAGAATATTTTGATCCGAGAAGACGGTCACATTATGTTGTCGGACTTCGATTTGTGCTTCAACGCAGACGTCGTTCCAAAACTGGATAGACGGACTCACAATGGGACAAGGAAGAAGCACGGTGGTTGTTTCGGCCGGAGACATACAGAAGAAGAAACGTTAACGGAGTTTGTAGCGGAGCCAACGACAGCCTTTTCGAAATCGTGCGTCGGGACTCATGAGTACTTGGCGCCGGAGTTGATCAGCGGGAATGGTCACGGCAATGGTGTCGATTGGTGGGCGTTTGGAGTTTTGGTTTACGAATTATTGTACGGAATGACGCCTTTTAGAGGAGGTAGTAAAGAGTCAACCCTGCGCAATATAGCATCGGCCACAGAAGTGAGATTTGATGACGATGGCGCGAGAGGGATGGCGCAGGCTAAGGACTTGATAGAGAGGTTACTGATAAAAGATCCAAGGCAGCGGCTAGGGTGCGCCAGGGGTGCGACAGATATTAAACGGCACCCGTTTTTCGACGGGATCAAGTGGCCGTTGATCCGCATGTACCGGCTGCCGGAGGTACGTGGGCTGGCGGTGAAGAAGAGTAGTAGGGCACACGTTAGTCACGTGAGCGGGTGGCAATCGTCCCTCAAGAAAAGGCGTTGGTTATGGAAGGGGCTTAGTTGTATATTATTGAAAAGTAAGGGATCAAAACGTAACTTAAACTCCAACCACAATTATTACCAATACAAAAATAGTATCAACGGTACGGTTTAG | 1434 | 50.35 | MEDDHYNALSHQDSDLDLSFTSSTSTSIATTSSARSSLARSSLCLSFNDRISSVSGVTPSTEIPNLHSRPHRKSDANWSAIRAATNLSSDGTLHLRHFKLVRHVGSGNLGRVFLCRLRDYDHASFALKVVDNNSLTSKKLSHVQTEARILSSLDHPFLPTLYAHLEVSHYTCFLIDFCPNGDLHSLLRKQPNYRLPIDSVRFFAAEVLVALEYLHSLGIVYRDLKPENILIREDGHIMLSDFDLCFNADVVPKLDRRTHNGTRKKHGGCFGRRHTEEETLTEFVAEPTTAFSKSCVGTHEYLAPELISGNGHGNGVDWWAFGVLVYELLYGMTPFRGGSKESTLRNIASATEVRFDDDGARGMAQAKDLIERLLIKDPRQRLGCARGATDIKRHPFFDGIKWPLIRMYRLPEVRGLAVKKSSRAHVSHVSGWQSSLKKRRWLWKGLSCILLKSKGSKRNLNSNHNYYQYKNSINGTV | 477 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cien5g03177 | 477 | CDD | STKc-phototropin-like | 96 | 413 | - | - | |
| Cien5g03177 | 477 | FunFam | Serine-threonine-protein kinase OXI1 | 290 | 415 | - | - | |
| Cien5g03177 | 477 | PANTHER | FLIPPASE KINASE 1-RELATED | 32 | 418 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Cien5g03177 | 477 | Gene3D | Transferase(Phosphotransferase) domain 1 | 292 | 411 | - | - | |
| Cien5g03177 | 477 | ProSiteProfiles | Protein kinase domain profile. | 98 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cien5g03177 | 477 | Gene3D | Transferase(Phosphotransferase) domain 1 | 178 | 262 | - | - | |
| Cien5g03177 | 477 | SUPERFAMILY | Protein kinase-like (PK-like) | 81 | 417 | IPR011009 | - | |
| Cien5g03177 | 477 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 219 | 231 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cien5g03177 | 477 | Gene3D | Phosphorylase Kinase; domain 1 | 96 | 177 | - | - | |
| Cien5g03177 | 477 | Pfam | Protein kinase domain | 99 | 248 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cien5g03177 | 477 | Pfam | Protein kinase domain | 292 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cien5g03177 | 477 | SMART | serkin-6 | 98 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cien5g03177 | 477 | FunFam | Serine-threonine-protein kinase WAG2 | 182 | 248 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cien5g03177 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cien | Cien-Chr5:76736030 | Cien9g00627 | Cien-Chr9:10774276 | dispersed | |
| Cien | Cien-Chr1:81230371 | Cien5g03177 | Cien-Chr5:76736030 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cien9g00627 | . | 4 | 438 | AGC Kinase gene family | AT2G34650 | 61.207 | 0.0 | 538.0 | |
| Cien9g00869 | . | 910 | 982 | AGC Kinase gene family | AT5G62310 | 50.667 | 1.41e-15 | 71.2 | |
| Cien9g00949 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.431 | 5.28e-10 | 62.0 | |
| Cien9g01344 | . | 135 | 233 | AGC Kinase gene family | AT5G58140 | 45.37 | 1.49e-21 | 97.8 | |
| Cien9g02357 | . | 242 | 467 | AGC Kinase gene family | AT4G14350 | 84.071 | 3.16e-147 | 421.0 | |
| Cien8g00314 | . | 49 | 97 | AGC Kinase gene family | AT5G04510 | 77.551 | 2.69e-17 | 73.9 | |
| Cien8g01452 | . | 92 | 586 | AGC Kinase gene family | AT5G47750 | 82.072 | 0.0 | 824.0 | |
| Cien8g01504 | . | 129 | 325 | AGC Kinase gene family | AT3G08730 | 24.561 | 2.03e-07 | 51.6 | |
| Cien8g01781 | . | 28 | 459 | AGC Kinase gene family | AT3G08720 | 56.416 | 4.81e-177 | 503.0 | |
| Cien7g01377 | . | 5 | 62 | AGC Kinase gene family | AT3G25250 | 45.0 | 4.55e-07 | 45.4 | |
| Cien7g01778 | . | 256 | 469 | AGC Kinase gene family | AT4G14350 | 82.71 | 2.52e-136 | 391.0 | |
| Cien7g02456 | ACH | 134 | 586 | AGC Kinase gene family | AT5G47750 | 71.212 | 0.0 | 661.0 | |
| Cien7g02700 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 43.636 | 1.52e-20 | 94.7 | |
| Cien7g03041 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 82.56 | 0.0 | 909.0 | |
| Cien6g00415 | . | 1 | 1007 | AGC Kinase gene family | AT1G45160 | 49.951 | 0.0 | 927.0 | |
| Cien6g00534 | . | 135 | 429 | AGC Kinase gene family | AT3G08720 | 37.037 | 5.98e-48 | 177.0 | |
| Cien6g00779 | . | 246 | 471 | AGC Kinase gene family | AT2G20470 | 39.207 | 3.40e-40 | 145.0 | |
| Cien6g02013 | . | 62 | 875 | AGC Kinase gene family | AT5G58140 | 72.934 | 0.0 | 1216.0 | |
| Cien5g00493 | . | 1 | 1288 | AGC Kinase gene family | AT3G17850 | 61.515 | 0.0 | 1419.0 | |
| Cien5g00768 | . | 1 | 464 | AGC Kinase gene family | AT3G08720 | 66.094 | 0.0 | 627.0 | |
| Cien5g01547 | . | 5 | 387 | AGC Kinase gene family | AT3G25250 | 55.808 | 2.65e-150 | 430.0 | |
| Cien5g02367 | . | 112 | 555 | AGC Kinase gene family | AT1G79250 | 73.102 | 0.0 | 677.0 | |
| Cien5g02639 | . | 318 | 417 | AGC Kinase gene family | AT2G20470 | 45.0 | 1.53e-15 | 69.7 | |
| Cien5g03177 | . | 1 | 471 | AGC Kinase gene family | AT1G53700 | 63.693 | 0.0 | 562.0 | |
| Cien5g03683 | . | 279 | 586 | AGC Kinase gene family | AT5G47750 | 77.742 | 1.36e-175 | 496.0 | |
| Cien4g00699 | . | 239 | 446 | AGC Kinase gene family | AT4G14350 | 76.923 | 8.36e-115 | 338.0 | |
| Cien4g02599 | . | 246 | 432 | AGC Kinase gene family | AT2G20470 | 47.872 | 1.00e-50 | 169.0 | |
| Cien3g02278 | . | 5 | 62 | AGC Kinase gene family | AT3G25250 | 43.333 | 4.86e-07 | 46.6 | |
| Cien3g02456 | . | 837 | 901 | AGC Kinase gene family | AT1G45160 | 64.615 | 5.41e-23 | 98.2 | |
| Cien3g02651 | . | 119 | 491 | AGC Kinase gene family | AT5G58140 | 32.564 | 1.73e-55 | 194.0 | |
| Cien3g03437 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 76.986 | 0.0 | 782.0 | |
| Cien3g03769 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 65.89 | 0.0 | 609.0 | |
| Cien3g03844 | . | 30 | 1164 | AGC Kinase gene family | AT5G62310 | 59.414 | 0.0 | 1305.0 | |
| Cien3g04126 | . | 1 | 1284 | AGC Kinase gene family | AT3G17850 | 63.828 | 0.0 | 1541.0 | |
| Cien2g01633 | . | 30 | 1164 | AGC Kinase gene family | AT5G62310 | 56.983 | 0.0 | 1245.0 | |
| Cien2g02301 | . | 220 | 467 | AGC Kinase gene family | AT4G14350 | 77.016 | 3.22e-146 | 419.0 | |
| Cien2g02542 | ACH | 16 | 395 | AGC Kinase gene family | AT3G20830 | 47.68 | 1.32e-95 | 289.0 | |
| Cien2g02689 | . | 464 | 903 | AGC Kinase gene family | AT3G52890 | 62.864 | 0.0 | 560.0 | |
| Cien2g02690 | ACH | 3 | 451 | AGC Kinase gene family | AT3G44610 | 65.605 | 0.0 | 568.0 | |
| Cien2g02826 | ACH | 98 | 586 | AGC Kinase gene family | AT5G47750 | 66.733 | 0.0 | 652.0 | |
| Cien2g02908 | . | 2 | 218 | AGC Kinase gene family | AT5G40030 | 62.273 | 1.70e-84 | 258.0 | |
| Cien2g04239 | . | 11 | 504 | AGC Kinase gene family | AT5G09890 | 77.328 | 0.0 | 815.0 | |
| Cien1g00997 | ACH | 3 | 451 | AGC Kinase gene family | AT3G44610 | 63.347 | 0.0 | 547.0 | |
| Cien1g01121 | ACH | 16 | 408 | AGC Kinase gene family | AT3G20830 | 57.531 | 6.55e-158 | 449.0 | |
| Cien1g02181 | . | 11 | 525 | AGC Kinase gene family | AT2G26700 | 58.824 | 0.0 | 572.0 | |
| Cien1g02877 | . | 246 | 471 | AGC Kinase gene family | AT2G20470 | 40.088 | 8.37e-42 | 150.0 | |
| Cien1g03013 | . | 1 | 471 | AGC Kinase gene family | AT1G53700 | 62.423 | 0.0 | 551.0 | |
| Cien1g03459 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 70.45 | 0.0 | 667.0 | |
| Cien1g03828 | . | 84 | 996 | AGC Kinase gene family | AT3G45780 | 72.775 | 0.0 | 1377.0 | |
| Cien1g04113 | . | 845 | 901 | AGC Kinase gene family | AT1G45160 | 77.193 | 1.66e-23 | 96.3 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cien | Pkinase | 8.5e-34 | CL0016 | PK | AGC_RSK-2 |