AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03188 ATGGCTTCTTTGCTACCTCTTACCACCTTCACCACCACCACAAGAACAAAGCCAAATTCCACCTCCAGCCGCCGTTTCAAGACTTTCCCCAAACAAACCCACCGCTTGAAAGTCTCATGCAACGTCGCACCAGATGATAATGAGAAGCTACTCCTAGTCCCCGAAACCCAAAACCTTATATTGCCCAAAACATCTGTCGACACTCTTAATGTGGATCGAAGGAATTTGCTCCTGGGACTCGGCGGCCTTTACAGCACCGTCAACTTCAGTTCCATTCCGGCAGCCTTTGCATCGCCTATCACGACACCTGAAATCTCCACATGCGTGCCGTCAACTGAAGGTTTCAACACGGATGACTCCGTAAGAAGCAACCAATGTTGTCCGCCGGCAATGTCAACAACCCCCAAAGACTTTGTGTTCCCTAAAGACACAACGATCCGGGTTAGACCAGCGGCACATAGAGCCAGTGCCGACTACGTGGCAAAATACAAAGCAGCAATCAAAGCCATGAGAGACCTCCCAGATGAACACCCACATAGTTTCGTCCAACAAGCGAGAATTCATTGCGCTTACTGCAACGGGGGTTACAGTCAAATCGCGAGTGGTTTTCCTGACAAGACTCTACAAATTCACAACTCATGGCTCTTTTTTCCTTTCCATCGTTGGTACTTGTATTTCTACGAGAGAATCCTCGGGAAGTTAATTGATGATCCCACTTTCGCTTTACCTTACTGGAACTGGGACGTTCCCAGCGGAATGGGTGTTCCAGCATTTTTCGAAGAGGACGGCAAGAAAAACCCTGCCTTTGACGCGTTCCGCAACGTCAACCATGTATCAGCAGCAGCAATCGTTGACCTCGACTACAATGGTTCAGATAGTGGCGCTACTTGTCTTCAACAGATAAGCACCAATCTTGGTGCAATGTATAAGCAGATGGTCAGCAACGCCGCTGACCCATTGAGCTTCTTCGGTGGCGAGTTTCGGGCTGGGGACGACCCCTATGGGAATGGTGACCCATCTATCGGGTCAATAGAGGCTGGTTGTCACACTGCGGTGCATAGATGGGTGGGTAACCCAAGAATGCTAAACAACGAGGACATGGGGAACTTCTACTCTGCGGGGTATGATCCTTTGTTCTACGTCCACCATGCCAATGTCGACCGTATGTGGAAAGTGTGGAAGGACTTGGGCATCCAAGGACACTCTGAACCTACAGACCCCGATTGGCTTAACGCATCATATGTGTTTTATGACGAAAACGAAGAGCTTGTACGTGTTTACAACAAAGATTGTGTCCAAATCGAAAACCTAAAATACGATTTCGAAGTGTCCCCACTCCCGTGGTTCTCGAGCCGTCCGGTTGCACATAAAAAGATCTCAAACACCTCCTCCACCTCCAGTTCCGCTGAAGCGGTTCAAAAAGTGCCGGACGTCAAGTTCCCGGTAAAGCTAGACAAGATAACGAAGGTCCTGGTGAAGAGGCCAGCCACAAAACGAAGCCAAGCGGACAAGGAGAAAGCGTCTGAGCAGTTGGTGATTAAAGGAATCCAATTCAATTCCCAGAAGTTCGTTAAGTTTGATGTGTTTGTGAATGACAAAGATGATGTTCCTGCAAGCTCAGCATCGGAGAGCGAGTTTGTAGGTAGTTTCGCGCAGTTGCCGCATCACCATCGCCACAAAAAGTTAATGAGGAGTGCGGCAAGGTTCGGTTTAACAGAGCTTTTGGAGGACATCGGCGCCGAGGATGATGAGTATATCTTGGTGACATTGGTGCCAAAGGTAGGGACTGAGGAACTCACCATTGACGAAATCAAGGTGGAATTTGTTCCTCTTAAGTAA 1839 48.67 MASLLPLTTFTTTTRTKPNSTSSRRFKTFPKQTHRLKVSCNVAPDDNEKLLLVPETQNLILPKTSVDTLNVDRRNLLLGLGGLYSTVNFSSIPAAFASPITTPEISTCVPSTEGFNTDDSVRSNQCCPPAMSTTPKDFVFPKDTTIRVRPAAHRASADYVAKYKAAIKAMRDLPDEHPHSFVQQARIHCAYCNGGYSQIASGFPDKTLQIHNSWLFFPFHRWYLYFYERILGKLIDDPTFALPYWNWDVPSGMGVPAFFEEDGKKNPAFDAFRNVNHVSAAAIVDLDYNGSDSGATCLQQISTNLGAMYKQMVSNAADPLSFFGGEFRAGDDPYGNGDPSIGSIEAGCHTAVHRWVGNPRMLNNEDMGNFYSAGYDPLFYVHHANVDRMWKVWKDLGIQGHSEPTDPDWLNASYVFYDENEELVRVYNKDCVQIENLKYDFEVSPLPWFSSRPVAHKKISNTSSTSSSAEAVQKVPDVKFPVKLDKITKVLVKRPATKRSQADKEKASEQLVIKGIQFNSQKFVKFDVFVNDKDDVPASSASESEFVGSFAQLPHHHRHKKLMRSAARFGLTELLEDIGAEDDEYILVTLVPKVGTEELTIDEIKVEFVPLK 612
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03188 612 Pfam Common central domain of tyrosinase 179 395 IPR002227 GO:0016491(InterPro)
Cien5g03188 612 Pfam Protein of unknown function (DUF-B2219) 480 608 IPR022740 GO:0004097(InterPro)
Cien5g03188 612 Pfam Polyphenol oxidase middle domain 404 453 IPR022739 GO:0004097(InterPro)
Cien5g03188 612 PANTHER TYROSINASE FAMILY MEMBER 71 576 IPR050316 -
Cien5g03188 612 PRINTS Tyrosinase copper-binding domain signature 242 247 IPR002227 GO:0016491(InterPro)
Cien5g03188 612 PRINTS Tyrosinase copper-binding domain signature 375 393 IPR002227 GO:0016491(InterPro)
Cien5g03188 612 PRINTS Tyrosinase copper-binding domain signature 211 228 IPR002227 GO:0016491(InterPro)
Cien5g03188 612 PRINTS Tyrosinase copper-binding domain signature 348 359 IPR002227 GO:0016491(InterPro)
Cien5g03188 612 Gene3D - 98 444 IPR008922 -
Cien5g03188 612 SUPERFAMILY Di-copper centre-containing domain 100 448 IPR008922 -
Cien5g03188 612 PIRSF PPO-plant 1 610 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Cien5g03188 612 ProSitePatterns Tyrosinase CuA-binding region signature. 211 228 IPR002227 GO:0016491(InterPro)
Cien5g03188 612 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 376 387 IPR002227 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03188 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
66532 Cien5g03188 Cien9g02335
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr1:81537008 Cien5g03188 Cien-Chr5:77159262 dispersed
Cien Cien-Chr2:44323962 Cien5g03188 Cien-Chr5:77159262 dispersed
Cien Cien-Chr5:77159262 Cien9g02336 Cien-Chr9:47251517 dispersed
Cien Cien-Chr5:77078011 Cien5g03188 Cien-Chr5:77159262 tandem