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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03218 ATGAAGATTCAGTGTAACGTATGTGAGATGGCGGAGGCGACGGTGCTCTGCTGCGCCGACGAGGCGGCTTTATGTTGGATTTGCGACGAGAAGATACACGCTGCTAATAACCTCGCCAGTAAGCATCAGAGAGTTCTTCTTTCTACTTCTAATTCTCAGATGCCTAAGTGTGATATCTGCCAGGAAACAGTCGGCTACTTCTTTTGTCTGGAAGACCGGGCTTTACTGTGCAGAAAATGCGATGTTGCAATTCATACAGTCAACACTTTTGTTTCATCACACCAGAGGTTTCTACTTACTGGAGTGAAAGTAGGACAAGAAGCTGCTGAACATGGTGCATCATCTTCTTCCGGGAAGTCAAACATCACCAAAACTGATGTCCCGTTGTCTCCAACTGATGAATACAGCAAACTTCCACCACCACTCCAAGCTTCTGAAATTGACTATTTTGCCCCTCCTAGTTTGCCTCCTGGTGTAGATTCTTCAGTCGATGGTGGTCAACAATGGCAGTTTGATGACTATCTTGGGCTTCTTACTGATTTCAACCAGGACTACAACTACATCGATAATGTCTCTCCCAAGGTTAATGATGGAAAGTTAGGAGATTCAGACTGTTCCCCAATACTAAAAGCTATGGAGGCCGAATTAGATGAAGGGTTAGGTCATGTTCCCGAAGCATCATGGTCAGTCCCACAAATGTGTTCACCACCTACTACTTTGGGCCTGAACTGGCCCAAAGTTAATGACCATCCTCACCAGTTTGAAGCACCTGCCTTTGTTCCTGATATATCCTACTCACACGTGCCACATGTATATCGTTTTTAA 825 45.09 MKIQCNVCEMAEATVLCCADEAALCWICDEKIHAANNLASKHQRVLLSTSNSQMPKCDICQETVGYFFCLEDRALLCRKCDVAIHTVNTFVSSHQRFLLTGVKVGQEAAEHGASSSSGKSNITKTDVPLSPTDEYSKLPPPLQASEIDYFAPPSLPPGVDSSVDGGQQWQFDDYLGLLTDFNQDYNYIDNVSPKVNDGKLGDSDCSPILKAMEAELDEGLGHVPEASWSVPQMCSPPTTLGLNWPKVNDHPHQFEAPAFVPDISYSHVPHVYRF 274
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03218 274 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 248 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cien5g03218 274 CDD Bbox1-BBX-like 56 99 IPR049808 -
Cien5g03218 274 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Cien5g03218 274 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cien5g03218 274 MobiDBLite consensus disorder prediction 110 130 - -
Cien5g03218 274 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cien5g03218 274 FunFam B-box zinc finger protein 22 1 93 - -
Cien5g03218 274 CDD Bbox1-BBX-like 5 47 IPR049808 -
Cien5g03218 274 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Cien5g03218 274 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Cien5g03218 274 Gene3D Classic Zinc Finger 1 92 - -
Cien5g03218 274 MobiDBLite consensus disorder prediction 110 138 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03218 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
64386 Cien1g02922 Cien5g03218
66536 Cien5g03218 Cien9g02320
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr4:59570547 Cien5g03218 Cien-Chr5:77592075 dispersed
Cien Cien-Chr5:77592075 Cien6g00371 Cien-Chr6:6537431 dispersed
Cien Cien-Chr1:79549860 Cien5g03218 Cien-Chr5:77592075 wgd
Cien Cien-Chr5:77592075 Cien9g02320 Cien-Chr9:46843211 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00552 . 1 69 C2C2-CO-like Transcription Factor family AT1G75540 53.623 1.19e-17 73.6
Cien9g01382 ACH 289 399 C2C2-CO-like Transcription Factor family AT1G68520 45.536 1.10e-20 91.7
Cien9g02186 . 4 75 C2C2-CO-like Transcription Factor family AT5G54470 72.222 4.81e-33 116.0
Cien9g02320 ACH 1 298 C2C2-CO-like Transcription Factor family AT1G78600 53.628 5.79e-94 278.0
Cien8g01580 . 1 328 C2C2-CO-like Transcription Factor family AT4G15250 36.119 3.90e-48 162.0
Cien8g01599 ACH 4 168 C2C2-CO-like Transcription Factor family AT5G54470 46.154 6.00e-30 112.0
Cien8g03026 ACH 55 216 C2C2-CO-like Transcription Factor family AT3G02380 39.796 2.20e-32 118.0
Cien7g01223 ACH 3 113 C2C2-CO-like Transcription Factor family AT4G27310 52.066 9.05e-33 117.0
Cien7g02599 . 11 401 C2C2-CO-like Transcription Factor family AT2G33500 38.235 6.10e-78 247.0
Cien6g00371 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.84 2.08e-77 238.0
Cien6g00750 ACH 220 333 C2C2-CO-like Transcription Factor family AT5G15850 36.207 1.78e-11 63.2
Cien6g01345 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 51.688 7.48e-98 296.0
Cien5g00156 . 9 328 C2C2-CO-like Transcription Factor family AT2G47890 46.175 1.01e-94 284.0
Cien5g01293 ACH 202 270 C2C2-CO-like Transcription Factor family AT2G24790 43.478 7.15e-11 59.3
Cien5g01854 ACH 285 353 C2C2-CO-like Transcription Factor family AT5G57660 43.478 1.05e-09 56.2
Cien5g03218 ACH 1 280 C2C2-CO-like Transcription Factor family AT1G78600 48.797 1.56e-78 238.0
Cien4g00967 . 89 134 C2C2-CO-like Transcription Factor family AT4G39070 41.304 4.58e-06 41.2
Cien4g01208 ACH 306 388 C2C2-CO-like Transcription Factor family AT5G24930 43.373 9.38e-12 63.9
Cien4g02170 . 3 221 C2C2-CO-like Transcription Factor family AT3G21150 29.832 1.08e-19 82.0
Cien3g00200 ACH 9 212 C2C2-CO-like Transcription Factor family AT5G57660 44.712 5.43e-49 169.0
Cien3g01571 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 58.407 4.84e-82 241.0
Cien3g01618 ACH 4 89 C2C2-CO-like Transcription Factor family AT5G54470 55.172 4.97e-28 104.0
Cien3g03979 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 3.12e-10 58.2
Cien2g00564 ACH 307 386 C2C2-CO-like Transcription Factor family AT5G24930 39.506 4.51e-11 62.0
Cien2g01519 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 5.22e-10 57.4
Cien2g03015 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 53.351 6.96e-121 352.0
Cien1g00267 ACH 190 270 C2C2-CO-like Transcription Factor family AT2G24790 44.444 1.48e-11 63.2
Cien1g01353 ACH 334 388 C2C2-CO-like Transcription Factor family AT5G24930 49.091 3.74e-11 62.8
Cien1g01918 ACH 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.194 2.21e-95 287.0
Cien1g02922 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.974 4.57e-92 273.0
Cien1g02947 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 48.485 6.74e-63 199.0
Cien1g03837 ACH 282 338 C2C2-CO-like Transcription Factor family AT5G15850 43.86 5.94e-11 59.7
Cien1g04140 . 213 361 C2C2-CO-like Transcription Factor family AT3G07650 55.346 8.13e-41 141.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cien zf-B_box 2.5e-07 CL0782 TR Others