AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03236 ATGAGCTCTTCGTTACTTTATCTGATTTTCTCAACTCTCGTTTCCATTTACGTGTTCCAGTTTCAAGCTCAAGCTGCTCCTGCTGCTCCGGTGATTAAGCAATTATCTTCCATACTCAAATGGACAGCTAGGTCTTCTTCCAAATCACCATTATCAGATGGGAATATTCTTCAATTTGAAGATGGATATTTAGTAGAAACCGTCGTAGAAGGGAATCAGCTAGGCGTCGTGCCTTATTCCATCAGAGTCTCGCAAGATGGTGAACTCTACGCTGTTGATGCAGTCAATAGCAACATCGTTCGAATCACTCCTCCATTATCTCAATATAGTAGGGCAAGATTGATTGCCGGATCCTTTCAGGGTTACACAGGACACGTAGATGGAAAATCAAATGATGCTCGCTTTGATCATCCAAAAGGTGTTACAATGGACGATAAAGGGAATGTTTATGTTGCTGATACTTCTAATCTTGCCATTAGAAAGATCGGTGAAGCAGGTGTGACAACAATTGCTGGAGGAAAATCGAATGTAGCAGGATACAGAGATGGCCCAAGTGAAGATGCACAGTTTTCATCTGATTTTGATGTAATTTATGTGAGACCAACATGTTCATTGCTAGTTATTGATCGAGGAAATGCTGCTCTTAGACAAATTTCTCTCAATCAAGAAGATTGTGATTTGCACTACACCTCTGTCTCTTCCACAGATATTGTTTTGGTAATTGGTGCTATCGCAATAGGATATGTTGTATGCATGATTCAGCAAGGATTCGGCTCATCATATTTCTCAAAAGTGGAAAAGGTGGAGAGTGATAGTAGTAGTAAACTACAAACCAAAGAAAAACCCTCAAAAATCACAAAAAATATAGAAAGTGTGAGGGAAGAACAAGAAGCGGGCTGGCCGTCTTTCAGCCAGCTCATTCTTGATCTTTCCAAATTAGCCCTCGAAGGCTTCACCAACATCTTTTCCTTCAACCCGTTTCAAACAAAGAAAACGGGCCTCACCCCATTAAAAGATTCTTTAATCATGCCCGAAGATGAGCCCCTTTTAGTTCAAAAACACACAACTTCAGCCCCTGTTTCAGAAACCCATCATAAAGAAACAAAGCCCGCGAAACTGAGGTCATTAAAAGATCCTTTAAAGCATCGGGTTTCAAAGAGGGAAGAGTATGCGGAGTTTTATGGGGCGAGTGGTGGTGGTGGTGGTGTTGTGGGCCCACATGTTCGGTCAAAAAGTCAAAAGGAAAGGACAAAGCATCGGGTTAGGGATAAGGAGAAAGTTGTGTATGGGGAGCAGAAGACGGTTGACTTGAAGCAACCGGTCAACTATGAGGACGGGAAGTTTAGTTATATGAGGAATAAGTATGGTGAATCGTATCGTTATACTTGA 1389 41.61 MSSSLLYLIFSTLVSIYVFQFQAQAAPAAPVIKQLSSILKWTARSSSKSPLSDGNILQFEDGYLVETVVEGNQLGVVPYSIRVSQDGELYAVDAVNSNIVRITPPLSQYSRARLIAGSFQGYTGHVDGKSNDARFDHPKGVTMDDKGNVYVADTSNLAIRKIGEAGVTTIAGGKSNVAGYRDGPSEDAQFSSDFDVIYVRPTCSLLVIDRGNAALRQISLNQEDCDLHYTSVSSTDIVLVIGAIAIGYVVCMIQQGFGSSYFSKVEKVESDSSSKLQTKEKPSKITKNIESVREEQEAGWPSFSQLILDLSKLALEGFTNIFSFNPFQTKKTGLTPLKDSLIMPEDEPLLVQKHTTSAPVSETHHKETKPAKLRSLKDPLKHRVSKREEYAEFYGASGGGGGVVGPHVRSKSQKERTKHRVRDKEKVVYGEQKTVDLKQPVNYEDGKFSYMRNKYGESYRYT 462
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03236 462 Pfam NHL repeat 135 161 IPR001258 GO:0005515(InterPro)
Cien5g03236 462 MobiDBLite consensus disorder prediction 401 425 - -
Cien5g03236 462 Gene3D - 21 220 IPR011042 -
Cien5g03236 462 PANTHER - 18 460 - -
Cien5g03236 462 SUPERFAMILY NHL repeat 68 217 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03236 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr4:66055081 Cien5g03236 Cien-Chr5:77727675 dispersed
Cien Cien-Chr5:77727675 Cien8g03268 Cien-Chr8:61768931 dispersed
Cien Cien-Chr5:77727675 Cien3g02561 Cien-Chr3:69922311 transposed