AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03253 ATGGCTTCGTCTTCTCTCTCACTAATCTGTTTCTTCTTCATCTTCGGATCCTTCTACATCTCCAACGCTGTTGTTCCTCCTTCCGACACCTTCCGGTACGTCAACCAAGGCGATTTCGGAATCTACGATTCGGAATACGACCCAAATTATCGAGCTCTGCCACCATTTACCACCCCATTCCAGCTCTGTTTCTATAACACCACCCCCAACGCCTACACTCTTGGTCTCCGTATGGGGACGAGACGTACCCGATCAGTCATGCGATGGGTGTGGGAAGCCAACAGAGGCAACCCAGTTGGCGAAAACGCCACATTCTCATTCGGCTCCGACGGAAACCTTGCACTGGCTCATGCAGATGGCCGGATCGCATGGCAAACAAACACCGCCAACAAGGGCGTCGTTGGTTTTGCCATACTCTCGAACGGTAACATGGTGCTTCGTGATTCCAAGGGTCGTTTTGTCTGGCAAAGCTTTGATTCACCATCTGATACGCTTTTGTTTGGTCAATCTCTCCGGATCGGAGGTCCGGCGAAGCTCGTTAGCAGGGCTTCAACGACGGACAATTCAAATGGGATGTATAGTATGGTGTTGGAGCCAAAACGACTGGGTTTGTACTATAAGTCCATGCTTTACTGGTCTTCCTCCTTCACAGAAGTCAACAAACCAAATGTGAATTTGGTTAATGCAACGTTCGAAGTCCAGGAAACCGAATACGAGGAGAACTACTTTAACGCGCTGAGGTTTCATCTCTCGAACTCTGATGATCAACCTAATTTGAACTTCGACATAACCAGATACAGCAGCACGTTATCATATCTCCGATTGGGCAGCGATGGGAATTTACGAGTCTACTCGTACCGTGCAAATGTAACTGGAAATGCATGGAGTCTGCTGTTCACTCTTTTTGATAGAAGAGTGAGCGAGAGGGCGGAGATAGTAGAAGACAAGTGCCAACTTCCCGAAAATTGCGGCAAGTTTGGGCTATGTGAGGATAGCCAATGCGTTGGATGTCCGTCGCCAAATGGTGTGTTTGCTTGGAGCAAAGCTTGCAATGCAAAGATGCCGGATTGTAACCCGAGTAGTTTCCGTTACTACCAGCTGAAAGGGGTTGACCATTTCACAGTAAAATACAGTCCGGGGACCGGGCCTGTGAAGCAGAGAGATTGCGAGAGCAAATGCACCAAGGATTGCAAGTGCATGGGGTATTTCTATCGCACGGATCAGTCGAGGTGTTGGATCGCTTACGAGTTGAAAACGTTGACGAGGGTTGGGAACTCGACTCATTTGGCGTACATCAAAACACCTGTCCGATAG 1314 48.78 MASSSLSLICFFFIFGSFYISNAVVPPSDTFRYVNQGDFGIYDSEYDPNYRALPPFTTPFQLCFYNTTPNAYTLGLRMGTRRTRSVMRWVWEANRGNPVGENATFSFGSDGNLALAHADGRIAWQTNTANKGVVGFAILSNGNMVLRDSKGRFVWQSFDSPSDTLLFGQSLRIGGPAKLVSRASTTDNSNGMYSMVLEPKRLGLYYKSMLYWSSSFTEVNKPNVNLVNATFEVQETEYEENYFNALRFHLSNSDDQPNLNFDITRYSSTLSYLRLGSDGNLRVYSYRANVTGNAWSLLFTLFDRRVSERAEIVEDKCQLPENCGKFGLCEDSQCVGCPSPNGVFAWSKACNAKMPDCNPSSFRYYQLKGVDHFTVKYSPGTGPVKQRDCESKCTKDCKCMGYFYRTDQSRCWIAYELKTLTRVGNSTHLAYIKTPVR 437
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03253 437 ProSiteProfiles Bulb-type lectin domain profile. 38 159 IPR001480 -
Cien5g03253 437 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 213 IPR036426 -
Cien5g03253 437 CDD B-lectin 44 161 IPR001480 -
Cien5g03253 437 PIRSF SLG 1 437 IPR035446 -
Cien5g03253 437 Gene3D - 56 159 IPR036426 -
Cien5g03253 437 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 59 434 IPR051343 -
Cien5g03253 437 SMART blect-4 44 161 IPR001480 -
Cien5g03253 437 Pfam D-mannose binding lectin 90 173 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03253 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:77962444 Cien5g03257 Cien-Chr5:78025209 dispersed
Cien Cien-Chr5:77954650 Cien5g03253 Cien-Chr5:77962444 tandem