AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03256 ATGGCTTCTCTCCATTCCATCTATACAACTTCCTTTCTGCTTTTGCTCAGCTTTCAGCTATTTTCCACCATTTCTGAAGCTGTTGTACCTGCTTCAGACACCTTCACTTACGTAAATGAAGGTGAATTTGGAGATTATATTGTTGAATACGATGCAAATTATCGTGCTCTCCCTCCATTCGCTAACCCATTCCAACTGTGTTTCTACAACACGACCCCCAACGCATTCACTCTAGCTCTACGTATGGGTACGGTCCGATCGGAGTCGCTCATGCGTTGGGTTTGGGAAGCTAACCGGGGGAACCCAGTTCGTGAGAACGCCACCCTGACCTTCGGTACAGATGGGAACCTTGTCCTGGCAGATGCCGATGGCCGGATTGCTTGGCAAACTAATACCGCCAACAAGGGCGTCGTCGGTTTTCAGGTGCTGCCTACCGGTAACATGGTTCTTCATGATGGGAAGGGTAATTTCATATGGCAAAGCTTCGATTCCCCAACGGACACTCTCTTGGTGGGTCAATCTCTCCGAGCTGGTGGTGCCAGTAAGCTGGTCAGTCGGGCTTCAGCCGTCAACAACATCGATGGACCGTATAGCTTGGTGATGGAGCCAAAACAGCTAGCCTTGTATTACAGGAGCGCCAACTCACCTCGCCCAATGCTTTATTGGTCCTCTATCGAATGGTTCACCATTGACAAGGGTAGTCTGGCTAATCTAACTCTTGCTTCAGTTCCAGATACCGATGCGGGTTTTCTTTATTACTTGTCGTTTAATTACTTTATGACAAACCCCTCCTCCAATTCGGATCGCTACATGGCCTACTCACGATACAACAACACGTTATCTTATCTTAGACTTGGAATAGATGGGAACCTTAGATTCTACACGTATAATCCAAACGTGCAAGGCGTTGCCTGGGAACTGGTATATACCTTTCTAGACCGGGATTCCATGGAAGGCGAGTGCCAATTACCTGAAAGATGCGGGAAGTTTGGGCTATGTGAGAATAGCCAGTGTGTTGCATGCCCGACACCAAACGGACTAAGTGGCTGGAGCAACGATTGTGACGCAAAGAAGGTGACATCTTGTAAAGCAAGTGACTTTGGGTACTACAAGCTTGAAGGTGTTGACCATTTTATGATTAAGTACACAAGGGGAGATGGAGGAAGTAAGCAAAGCGATTGTGAAAGCAAATGCACCAAGGACTGCAAGTGCATGGGGTATTTCTACCACACACAAGGGTCAAGGTGCTGGATTGCTTACGATTTGAAAACATTAACAAGAGTTGGAAACTCGACTCATCTGGCGTACGTTAAAGCACCCAAGTAG 1326 47.29 MASLHSIYTTSFLLLLSFQLFSTISEAVVPASDTFTYVNEGEFGDYIVEYDANYRALPPFANPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFGTDGNLVLADADGRIAWQTNTANKGVVGFQVLPTGNMVLHDGKGNFIWQSFDSPTDTLLVGQSLRAGGASKLVSRASAVNNIDGPYSLVMEPKQLALYYRSANSPRPMLYWSSIEWFTIDKGSLANLTLASVPDTDAGFLYYLSFNYFMTNPSSNSDRYMAYSRYNNTLSYLRLGIDGNLRFYTYNPNVQGVAWELVYTFLDRDSMEGECQLPERCGKFGLCENSQCVACPTPNGLSGWSNDCDAKKVTSCKASDFGYYKLEGVDHFMIKYTRGDGGSKQSDCESKCTKDCKCMGYFYHTQGSRCWIAYDLKTLTRVGNSTHLAYVKAPK 441
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03256 441 Pfam S-locus glycoprotein domain 233 346 IPR000858 GO:0048544(InterPro)
Cien5g03256 441 CDD PAN-AP-plant 361 438 - -
Cien5g03256 441 CDD B-lectin 48 165 IPR001480 -
Cien5g03256 441 Gene3D - 44 163 IPR036426 -
Cien5g03256 441 ProSiteProfiles Bulb-type lectin domain profile. 32 163 IPR001480 -
Cien5g03256 441 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 212 IPR036426 -
Cien5g03256 441 SMART blect-4 48 165 IPR001480 -
Cien5g03256 441 PIRSF SLG 1 441 IPR035446 -
Cien5g03256 441 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 61 439 IPR051343 -
Cien5g03256 441 Pfam D-mannose binding lectin 94 177 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03256 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:78008881 Cien5g03260 Cien-Chr5:78060765 dispersed
Cien Cien-Chr5:78001983 Cien5g03256 Cien-Chr5:78008881 tandem
Cien Cien-Chr5:78008881 Cien5g03257 Cien-Chr5:78025209 tandem