AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03257 ATGTTGGATAATACAGTGGCTTCAAAACATTATCCAGTCTATATATACGAGCTCTTTCCTGCTCTCAAAACACCAACGAAAATGGCTTCTCCCCATTCCATCTATACAACTTCCTTTCTTCTTTTGCTCAGCTTTCAGCTATTTTCCACCATTTCTGAAGCTGTTGTACCTGCTTCAGACACCTTCACTTACGTAAACGAAGGTGATTTTGGAGAGTATATTGTCGAATACGATGCAAATTATCGTGCTCTCCCTCCATTCGCTAACCCATTCCAGTTGTGTTTCTACAACACGACCCCCAACGCATTCACTCTAGCTCTACGTATGGGTACGGTCCGATCGGAGTCGCTCATGCGTTGGGTTTGGGAAGCTAACCGGGGGAACCCAGTTCGTGAGAACGCCACCCTCACCTTCGGTACAGATGGAAACCTTGTCCTGGCGGATGCCGATGGCCGGATTGCCTGGCAAACTAATACCGCCAACAAGGGTGTTGTCGGTTTTCAGGTGCTGCCTACCGGTAACATGGTTCTTCATGATGGCAAGGGTAATTTCATATGGCAAAGCTTCAATTCCCCATCTGATACTCTCCTTGTCGGTCAAAGCCTCCGAGCTGGTGGTGCAAGTAAGCTGGTCAGTCGGGCTTCGGCCGAGAACAACATCGATGGACCGTATAGCTTGGTGATGGAGCCTAAACAGCTAGCCTTGTATTACAAGAGCGCCAACTCACCTCGCCCAATGCTTTATTGGTCCTCTATCGAATGGTTCACCATTGACACGGGTAGTCTGGATAATATAACTGTTACTTCATTTCCAGATACCGATGAGGGTTTTCTTTATTTCTCGACGTTTCTTTACTTTACGACAAACCCCTCCTACAATTCGAATCGCAACATTGCCTACTCACGATACAACAACACGTTATCTTATCTTAGACTTGGGATAGATGGGAACCTTAGATTCTACACGTATAATCCAAACGTGCAAGGCGTTGCCTGGGAACTGGTAGAAACGTTTCTCGACAGGGACTCCAGACTGGAAGGCGAGTGCCAATTACCTGAAAGATGCGGGAAGTTTGGGCTATGTGAGAATAGCCAGTGTGTTGCATGCCCGACACCAAACGGACTAAGTGGATGGAGCAAAGATTGTGACGCAAAGAAGGTGACATCTTGTAAAGCAAGTGACTTTGGGTACTACAAGCTTGAAGGTGTTGACCATTTTATGATTAAGTACACAAGGGGAGATGGAGGAAGTAAGCAAAGCGATTGTGAAAGCAAATGCACCAAGGACTGCAAGTGCATGGGGTATTTCTACCACACACAAGGGTCGAGGTGCTGGATTGCTTACGATTTGAAAACATTAACAAGAGTTGGAAACTCAAGTCATTTGGCGTACATCAAAACACCCAAGTAG 1410 46.31 MLDNTVASKHYPVYIYELFPALKTPTKMASPHSIYTTSFLLLLSFQLFSTISEAVVPASDTFTYVNEGDFGEYIVEYDANYRALPPFANPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFGTDGNLVLADADGRIAWQTNTANKGVVGFQVLPTGNMVLHDGKGNFIWQSFNSPSDTLLVGQSLRAGGASKLVSRASAENNIDGPYSLVMEPKQLALYYKSANSPRPMLYWSSIEWFTIDTGSLDNITVTSFPDTDEGFLYFSTFLYFTTNPSYNSNRNIAYSRYNNTLSYLRLGIDGNLRFYTYNPNVQGVAWELVETFLDRDSRLEGECQLPERCGKFGLCENSQCVACPTPNGLSGWSKDCDAKKVTSCKASDFGYYKLEGVDHFMIKYTRGDGGSKQSDCESKCTKDCKCMGYFYHTQGSRCWIAYDLKTLTRVGNSSHLAYIKTPK 469
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03257 469 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 88 468 IPR051343 -
Cien5g03257 469 SMART blect-4 75 192 IPR001480 -
Cien5g03257 469 SUPERFAMILY alpha-D-mannose-specific plant lectins 100 237 IPR036426 -
Cien5g03257 469 CDD PAN-AP-plant 389 468 - -
Cien5g03257 469 PIRSF SLG 29 469 IPR035446 -
Cien5g03257 469 Gene3D - 67 191 IPR036426 -
Cien5g03257 469 CDD B-lectin 75 192 IPR001480 -
Cien5g03257 469 Pfam D-mannose binding lectin 121 204 IPR001480 -
Cien5g03257 469 ProSiteProfiles Bulb-type lectin domain profile. 59 190 IPR001480 -
Cien5g03257 469 Pfam S-locus glycoprotein domain 259 374 IPR000858 GO:0048544(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03257 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:77954650 Cien5g03257 Cien-Chr5:78025209 dispersed
Cien Cien-Chr5:77962444 Cien5g03257 Cien-Chr5:78025209 dispersed
Cien Cien-Chr5:78025209 Cien5g03260 Cien-Chr5:78060765 proximal
Cien Cien-Chr5:78008881 Cien5g03257 Cien-Chr5:78025209 tandem