AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03267 ATGCTTCTTTCTCGTATGAAGAGGCGATCTCTGCGATGGAGACGAACAGCCAGGAATTTAATCATCTTCTCTGTTCTCTTTGAGTTTGTTGCAATCGGTTATGCTATCATGACAACAAGAACAGTAAACATGGAATGGAGAATGCGATCATTACGAGTCTTACCAATGTTTCTTCTACCTGCTTTATCATTCGCTTTGCATTACGGACTTTTGAGCTTCACGAGATACGGTGATCGCAGGGATCAGAAGACATTAGAGAAACTTCGAGCTGAAAGACAAGCAAAAATTGATGAACTAAAAGAGAGAACCAATTACTACATTACTCAACAACTCATTCAGAAATACGATCCTGATCCAGCAGCAAAAGCAGCTGCTGCATCTGTTCTTGCATCAAAACTGGGTGCAGATTCAGGCCTGAAAGTGTTTCTTGGAGACGAATCACAACCAAATCCGTACGCAACATCGAAGAACAATGAAGTCGAGGTTCATCAAACTACTGGTCTCAGAAAACGAAATCAATCAACAAACCCTAGAAGTAATCCAGTCCAGCAATCTGAAAACGAAATTGGAGATGGAAGTTCTGAGAAATCTTCACATGGTGATATTGTGGTTCATCACCAAGATCCAGCAACTTTAGGTGGTCAAGACGGTGGTTGGATTGCTAGAATTGCTGCATTGCTTGTAGGAGAAGACCCAACACAATCTTATGCACTTATATGTGGGAATTGTCATATGCATAATGGACTTGCAAGAAAGGAGGAGTTTCCATTTATTACTTACTATTGTCCACATTGTCATGCATTAAATAAACCCAAAAATTCTGGGATTTCTTCTGAAACCATGTCCCCTGTTTTGGGACCTTCAAGAACAGCAAGTCAAGATGTTAAATTGATTGAAGAAAATAAGGAGTTGATGGGTGAAAAAGTACCGGATGACATCACCAGCCACGTGGCAGGTGAAGTGGAAGAGAAAGAAGAAAGTGAGAATTAG 990 40.61 MLLSRMKRRSLRWRRTARNLIIFSVLFEFVAIGYAIMTTRTVNMEWRMRSLRVLPMFLLPALSFALHYGLLSFTRYGDRRDQKTLEKLRAERQAKIDELKERTNYYITQQLIQKYDPDPAAKAAAASVLASKLGADSGLKVFLGDESQPNPYATSKNNEVEVHQTTGLRKRNQSTNPRSNPVQQSENEIGDGSSEKSSHGDIVVHHQDPATLGGQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEEFPFITYYCPHCHALNKPKNSGISSETMSPVLGPSRTASQDVKLIEENKELMGEKVPDDITSHVAGEVEEKEESEN 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03267 329 Coils Coil 82 102 - -
Cien5g03267 329 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 3 291 IPR040115 GO:0071782(PANTHER)|GO:0071786(PANTHER)|GO:0071786(InterPro)
Cien5g03267 329 MobiDBLite consensus disorder prediction 146 200 - -
Cien5g03267 329 MobiDBLite consensus disorder prediction 148 191 - -
Cien5g03267 329 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 219 269 IPR019273 -
Cien5g03267 329 MobiDBLite consensus disorder prediction 305 323 - -
Cien5g03267 329 MobiDBLite consensus disorder prediction 305 329 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03267 K23292 endoplasmic reticulum junction formation protein lunapark
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Event-related genes

Select Gene_1 Gene_2 Event_name
64376 Cien1g02906 Cien5g03267
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr1:79364256 Cien5g03267 Cien-Chr5:78212681 wgd