AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cien5g03269 | ATGAAGGGACATTGCATGAATTCCTTAAAGTTGTTATTGAGCTGCAACGTCGAGGATTTACATGATGATTGTTTCGAAGGTTCTATGGACGATAAACACATTTTTAGAGAAGTGTTCTTTGGACATGGAGATAGTAGAAGTACTAAAAGGTGTCCTGTAACTGGACCAATCACTTTTCAAAATGACAAAAACTTTCCTAAACATATCTCATTTCATTCAGACAGTGACAATTCAGTCATGACAAGTCAGCAGGATTCTTTACAGTGTAGCACTTCTGAAGAGTTTGCTTCATCTACAAGAAATGTCTCTGATGTTGAAGTTAAACGAAGAAAAGTGTCACCTGAAGAACATTCTGTCACAAAACCTGTTAAATCTTCTAAGCCAAGATGGAAAGATTCTTCATTCATTGAACTTGATAAAGATGAACTACTATTTGTCCCCCCTAAAGATTCCACCATAGATCCTAAACCTCTTTTGCGTTATTACACATATTCTTTACTTAAATCAGCAGGTTGGTTAATTGGGAGACGTAACAGAACCACACACTGTAAAGGGCGTGGAGAATATGTCTTCAAATCTCCAGAAGGAAGGCCAATTCGGGAATTTCACAGAGCTTGGAATTTGTGTGGTCACAATTTAGTTCAAGATGCAAACTATAAAAGCATACGTGATGACATAAAGTGGACAAATTTCCCTCAATTTCAATCTGATCTTTCCAATGCGTTGACCAAAGTCAAAGAATTGATAAATTCGAGCACAGTTACTGATTTAGCTCATTGTTGGTACTTACTTGATCCCTTTGCAAAAGTGGTGTTCATTGACAAGAGTTTGACTTATCTGAAAGAAGGGAAAGAAGTCAAAGGAAAGAGAAGTGTGGTCACTAGTTCGTATTCGAAAAAGCAGAAAACAAAAAAGGGTAAAAAAGGGAATTGTCATTTGAGAGACGACGACCTTTTACTCTCGGCTATATTCAGTAACCGATCTATTACTACAAAAAGGAACTCTCCTGTTCCGAAAGTTGTGAGAAAGTACGATAATGCCCTTGGTGTAAGAACAGTTTTGTCTTGGTTGATAAAACTTGGAGTTATTCGTGTCAATGAAGTGATCCAGTACAGGAACCCACACGATGATACGGTGGTCAAACATGGTTTAGTAACACAAAATGGTATTTTGTGTATGTGTTGTAAGAAAGTGCTTTGTGTGTCTGAATTCAAGAATCATGCGAGTTCGAATCTTTTTAGCATGAAAAACACGTGTTTGAATCTTTTTATGGAATCTGGAAAATCTTTCACTTTATGCCAGCTGGAAGCTTGGTCAACTGAATACAAGGTTAGGAAAAATGCCACACGGACTGTACAGGTGGCGATTGATCAATATGATGATACTTGTGGACTTTGTGGTGATGGAGGTGAGTTGGTATGTTGTGATAATTGTCCTTCCACTTTTCATCAAGGGTGCTTGTCTACACAGGAGTTACCTGAAGGGAATTGGTATTGTTCAACTTGCTGTTGTTGGAGCTGTGGGAATTTAGTCAGCCATATTGAGGCTTCAGAATCTAATGCTCTCAAATGTTTGCAATGTGAACATAAATATCATTCAGAATGTGTCAAAGGGAAAGGAATCGAGAGAGATTTGGGTCCCACGTGGTTTTGTGGAGAAACCTGTAAAGAGATACACTCAAGACTTCATTCCCAGATCGGACGTCAGAATCCGATTTCCAATGGTTTCTCATGGACCCTTTTAAGGTGTATTCATGGTGACCAAAAGGTTCATTCCACTCCGGCTTTCATTGCTCTGAAGGCGGAATGCAATCTAAAACTAGCAGTTGCCCTTACAATCATGGAGGAATGCTTTCTTCCTATGGTGGACACAAGAACCGGAATCTATATGATACCCCATGTATTATACAATTGGGGATCGGAATTTGTTCGTCTCAACTATGAGGGATTTTACACGGTGGTCCTTGAGAAAAATGATATCTTACTTTCTGTAGCATCCATAAGGATCCATGGGGGAACGGTAGCAGAGTTGCCTCTAATTGCAACATGCACCAAATATAGACGCCAAGGCATGTGCAGGCGGCTCTTGAACGCTATTGAAGAGATGCTGAAGTCGTTTAAAGTAGAGAAGCTAGTGGTGTCTGCAATCCCAAGCTTAGTTGACACGTGGACAGATGGGTTTGGTTTTTTACGGTTGGAAGTTGATGAGAAAAGAAGTCTGGAAAGAACTAACCTCATGGTCTTTCCGGGAACCGTATGGCTTAAAAAGCCCATGTACAACAAGGAATTTGACGTGGCTGTGTAG | 2304 | 39.71 | MKGHCMNSLKLLLSCNVEDLHDDCFEGSMDDKHIFREVFFGHGDSRSTKRCPVTGPITFQNDKNFPKHISFHSDSDNSVMTSQQDSLQCSTSEEFASSTRNVSDVEVKRRKVSPEEHSVTKPVKSSKPRWKDSSFIELDKDELLFVPPKDSTIDPKPLLRYYTYSLLKSAGWLIGRRNRTTHCKGRGEYVFKSPEGRPIREFHRAWNLCGHNLVQDANYKSIRDDIKWTNFPQFQSDLSNALTKVKELINSSTVTDLAHCWYLLDPFAKVVFIDKSLTYLKEGKEVKGKRSVVTSSYSKKQKTKKGKKGNCHLRDDDLLLSAIFSNRSITTKRNSPVPKVVRKYDNALGVRTVLSWLIKLGVIRVNEVIQYRNPHDDTVVKHGLVTQNGILCMCCKKVLCVSEFKNHASSNLFSMKNTCLNLFMESGKSFTLCQLEAWSTEYKVRKNATRTVQVAIDQYDDTCGLCGDGGELVCCDNCPSTFHQGCLSTQELPEGNWYCSTCCCWSCGNLVSHIEASESNALKCLQCEHKYHSECVKGKGIERDLGPTWFCGETCKEIHSRLHSQIGRQNPISNGFSWTLLRCIHGDQKVHSTPAFIALKAECNLKLAVALTIMEECFLPMVDTRTGIYMIPHVLYNWGSEFVRLNYEGFYTVVLEKNDILLSVASIRIHGGTVAELPLIATCTKYRRQGMCRRLLNAIEEMLKSFKVEKLVVSAIPSLVDTWTDGFGFLRLEVDEKRSLERTNLMVFPGTVWLKKPMYNKEFDVAV | 767 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cien5g03269 | 767 | Gene3D | - | 633 | 739 | - | - | |
| Cien5g03269 | 767 | Pfam | Tify domain binding domain | 383 | 436 | IPR032308 | - | |
| Cien5g03269 | 767 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 644 | 718 | IPR016181 | - | |
| Cien5g03269 | 767 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 609 | 759 | IPR000182 | GO:0016747(InterPro) | |
| Cien5g03269 | 767 | PANTHER | PHD FINGER FAMILY PROTEIN | 345 | 763 | - | - | |
| Cien5g03269 | 767 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 447 | 521 | IPR013083 | - | |
| Cien5g03269 | 767 | ProSiteProfiles | Zinc finger PHD-type profile. | 460 | 505 | IPR019787 | - | |
| Cien5g03269 | 767 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
| Cien5g03269 | 767 | CDD | NAT-SF | 653 | 714 | - | - | |
| Cien5g03269 | 767 | SMART | PHD-3 | 504 | 556 | IPR001965 | - | |
| Cien5g03269 | 767 | SMART | PHD-3 | 462 | 503 | IPR001965 | - | |
| Cien5g03269 | 767 | Pfam | PHD-finger | 463 | 502 | IPR019787 | - | |
| Cien5g03269 | 767 | SUPERFAMILY | FYVE-PHD zinc finger | 448 | 503 | IPR011011 | - | |
| Cien5g03269 | 767 | Pfam | Acetyltransferase (GNAT) family | 648 | 712 | IPR000182 | GO:0016747(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cien5g03269 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 64374 | Cien1g02904 | Cien5g03269 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cien | Cien-Chr3:17522485 | Cien5g03269 | Cien-Chr5:78220844 | dispersed | |
| Cien | Cien-Chr5:78220844 | Cien9g01630 | Cien-Chr9:24213696 | dispersed | |
| Cien | Cien-Chr1:79352170 | Cien5g03269 | Cien-Chr5:78220844 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cien9g01148 | . | 557 | 637 | PHD Transcription Factor family | AT2G36720 | 36.957 | 3.78e-09 | 51.6 | |
| Cien9g01328 | . | 1 | 685 | PHD Transcription Factor family | AT4G30200 | 44.223 | 2.07e-177 | 519.0 | |
| Cien9g01630 | . | 34 | 931 | PHD Transcription Factor family | AT1G05380 | 42.748 | 0.0 | 648.0 | |
| Cien8g00577 | . | 33 | 363 | PHD Transcription Factor family | AT5G57380 | 21.944 | 4.79e-11 | 65.1 | |
| Cien8g01432 | . | 130 | 217 | PHD Transcription Factor family | AT5G57380 | 32.039 | 2.77e-09 | 57.4 | |
| Cien8g02412 | ACH | 684 | 760 | PHD Transcription Factor family | AT4G14920 | 35.366 | 1.12e-07 | 54.7 | |
| Cien7g01269 | . | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 37.037 | 3.12e-07 | 53.1 | |
| Cien7g01828 | ACH | 650 | 722 | PHD Transcription Factor family | AT5G36670 | 39.744 | 9.89e-08 | 53.5 | |
| Cien7g03076 | . | 1542 | 1616 | PHD Transcription Factor family | AT5G35210 | 38.667 | 5.48e-09 | 52.8 | |
| Cien7g03109 | . | 81 | 661 | PHD Transcription Factor family | AT5G22260 | 31.086 | 7.04e-87 | 284.0 | |
| Cien6g01628 | . | 26 | 159 | PHD Transcription Factor family | AT5G58610 | 30.657 | 1.43e-09 | 58.9 | |
| Cien5g00253 | ACH | 312 | 940 | PHD Transcription Factor family | AT1G05380 | 44.833 | 1.86e-178 | 555.0 | |
| Cien5g01270 | . | 164 | 301 | PHD Transcription Factor family | AT3G53680 | 52.055 | 1.55e-42 | 153.0 | |
| Cien5g02361 | . | 1 | 504 | PHD Transcription Factor family | AT2G18880 | 35.893 | 3.82e-95 | 297.0 | |
| Cien5g02495 | . | 211 | 985 | PHD Transcription Factor family | AT4G14920 | 45.63 | 0.0 | 644.0 | |
| Cien5g03269 | ACH | 540 | 1024 | PHD Transcription Factor family | AT3G14980 | 55.714 | 1.99e-178 | 541.0 | |
| Cien4g01291 | . | 212 | 486 | PHD Transcription Factor family | AT5G22260 | 26.715 | 3.45e-18 | 79.3 | |
| Cien4g01764 | . | 2 | 64 | PHD Transcription Factor family | AT4G30200 | 63.492 | 2.50e-21 | 86.7 | |
| Cien4g01889 | ACH | 515 | 795 | PHD Transcription Factor family | AT2G36720 | 54.196 | 3.47e-99 | 335.0 | |
| Cien3g00310 | ACH | 507 | 1015 | PHD Transcription Factor family | AT5G58610 | 43.911 | 4.19e-131 | 425.0 | |
| Cien3g00620 | ACH | 318 | 459 | PHD Transcription Factor family | AT5G35210 | 25.17 | 2.04e-06 | 48.9 | |
| Cien3g00885 | ACH | 312 | 936 | PHD Transcription Factor family | AT1G05380 | 45.512 | 2.13e-175 | 547.0 | |
| Cien3g03676 | . | 1545 | 1704 | PHD Transcription Factor family | AT5G35210 | 37.5 | 1.08e-23 | 104.0 | |
| Cien3g03822 | . | 320 | 403 | PHD Transcription Factor family | AT5G22260 | 38.202 | 4.87e-06 | 46.6 | |
| Cien2g01271 | ACH | 681 | 760 | PHD Transcription Factor family | AT4G14920 | 35.294 | 1.36e-08 | 56.2 | |
| Cien2g02267 | . | 39 | 831 | PHD Transcription Factor family | AT3G53680 | 53.471 | 0.0 | 835.0 | |
| Cien1g00045 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 28.261 | 1.37e-08 | 54.3 | |
| Cien1g00145 | . | 615 | 661 | PHD Transcription Factor family | AT5G22260 | 44.681 | 3.13e-06 | 49.3 | |
| Cien1g00571 | ACH | 512 | 989 | PHD Transcription Factor family | AT2G36720 | 46.154 | 1.16e-150 | 458.0 | |
| Cien1g00757 | . | 1542 | 1706 | PHD Transcription Factor family | AT5G35210 | 83.636 | 4.92e-85 | 287.0 | |
| Cien1g01041 | . | 253 | 973 | PHD Transcription Factor family | AT2G36720 | 47.139 | 0.0 | 652.0 | |
| Cien1g02251 | . | 46 | 580 | PHD Transcription Factor family | AT3G24440 | 46.512 | 5.29e-154 | 455.0 | |
| Cien1g02904 | ACH | 539 | 1031 | PHD Transcription Factor family | AT3G14980 | 59.841 | 0.0 | 613.0 | |
| Cien1g03378 | . | 15 | 984 | PHD Transcription Factor family | AT4G14920 | 45.581 | 0.0 | 756.0 | |
| Cien1g03734 | . | 351 | 975 | PHD Transcription Factor family | AT5G58610 | 33.739 | 1.05e-97 | 320.0 | |
| Cien1g03939 | ACH | 565 | 975 | PHD Transcription Factor family | AT5G58610 | 46.501 | 1.91e-127 | 403.0 | |
| Cien1g04417 | ACH | 514 | 923 | PHD Transcription Factor family | AT1G05380 | 47.073 | 6.31e-116 | 369.0 |