AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03273 ATGGCTTCAGGGATATTAGATGCGGACAAGATAAGCAAAGGGAAGAGTAAGTGGGGAGAGGGTAATAAAGTCTACACAAGAAGATTCAAACGAACCGCCAAGAACACCTCCGCCGCCGCCGCCGCCCCGTCTTCCCCAACCACCACCGTCACCGCTAATTCTCCACCTACTATCAGAACCGACACCACCGTCCCAGATTCTCCACCCACCACCACAAACAACGAGCAAACTCTAGCTACTGAAGACGCAAATTCGGAAAAACAACACACCTTATCGCCGGTAGTAGAGGTATCAGATGATCAGTCTGTTCAAATCGCTGCTTCCCCAAATGTTCCCACCGCCAACGGAGTGATAAAACCGGTTGTTACCTTCATAGATGACCGTGTTAAGATCAATTTAAAAGCTGCGACGTCTAAGAATGAGATTATCGAGCTTAAACAGAAGCTGAGGTCCGAGCTAAATCAAGTCCGACGTTTAACACAAAAGCTTGAAGACAAAGAAGCCGAGCTAACAGCCTTTTCAACTGTTCTTACCGTTCCTGAAGGTGAAGCGTACACTCATTCACAGTATTCAGGTAATGATATAGTCGAGAGACGAGCTTTACTCAGAGTAAATTCAGAAATGGGTACTGATTTCGTGGATAGAAGAGCTTTGATGCGGATAAATTCTGAAGTTGGAACGACTCCAAGTCCTGGAATGAGGCCTTTCAGACAACTAAATGTATCGATTGTGGATAACAACAATCATGGAATCAGTGAGTTCATCGAGAAAGAAAAGAGGACACCAAAAGCCAATCAGTATTACCGGAATTCAGATTTCCTTCTTGGAAAAGACAGATTACCGCCTGAAACCAACAAGAGACATAAATCTAACGGTGGAAGAAAACACAGCAAGGAATCAGATTACTCTTCTGGACATGAAAAACACAGGAATCAAATGTTCAAGAACTGCAACAATTTACTACAGAGGTTAATGAAGCACAAACATGGCTGGGTGTTCAACGAGCCTGTAAACGCAAAGCTTCTTGGACTCCATGATTACCATGACATCATCAAACACCCAATGGATTTCGGCACAATCAAGAGCCGACTTGCTCAAAACTTCTACAAGTCTCCAATGGAGTTCGCGGAAGATGTCAGACTAACTTTCTACAACGCCATGACTTACAATCCAAAAGGACAAGATGTACACGTAATGGCGGAACAGTTGTCAAACATCTTTGAAGAAAAATGGTCAGCGATTGAATCTGAATCAAATCCCGATTGGAGATACGGTTCGATTTACGATGCAAACACTCCAACAAGTCGAACACCGACTTCAAGAAAAGCTCCTCATTTTGCACCATCGAGGACACTGTACAGGTCAGAATCCATGTCATTACCTTTCATGACTCGGTCAAACCCAAAACCCAAAATTACCCCTGTGAGTAGGACACCTGTACCCAAGAAACCCAAAGCTAAAGACCCAAACAAGAGAAACATGACGTATGAAGAGAAGCAAAAACTCAGTACAAATCTTCAGAGTCTACCTTCTGAAAAGCTCGACAACATTGTCCAGATCATCAAAAAGAAGAACACGTCACTTTCGCAACATGATGATGAAATTGAAGTTGACATTGATAGTGTTGATATAGAAACTCTTTGGGAGCTCGATAGATTTGTTACAAATTATAAAAAAAGTTTGAGTAAACACAGAAGGAAAGCCGAACTTGCCCAACAAGCTAATCAGACTGCATCACAGAATCATCTAACATCCATGGAAGCCCCAAAAGAGAATAAAACAAATGAGAAGACTCTTGCTAGTAGTGTTGTTGTGATTCTGGATCATCTTCAAGTGATTCGGATAGTGATAGTTCATCTGAAGATGGATCAGATGCTGGTCATTGATAAAGTTTGTTGGAGATTATTATGA 1911 42.28 MASGILDADKISKGKSKWGEGNKVYTRRFKRTAKNTSAAAAAPSSPTTTVTANSPPTIRTDTTVPDSPPTTTNNEQTLATEDANSEKQHTLSPVVEVSDDQSVQIAASPNVPTANGVIKPVVTFIDDRVKINLKAATSKNEIIELKQKLRSELNQVRRLTQKLEDKEAELTAFSTVLTVPEGEAYTHSQYSGNDIVERRALLRVNSEMGTDFVDRRALMRINSEVGTTPSPGMRPFRQLNVSIVDNNNHGISEFIEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRHKSNGGRKHSKESDYSSGHEKHRNQMFKNCNNLLQRLMKHKHGWVFNEPVNAKLLGLHDYHDIIKHPMDFGTIKSRLAQNFYKSPMEFAEDVRLTFYNAMTYNPKGQDVHVMAEQLSNIFEEKWSAIESESNPDWRYGSIYDANTPTSRTPTSRKAPHFAPSRTLYRSESMSLPFMTRSNPKPKITPVSRTPVPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKSLSKHRRKAELAQQANQTASQNHLTSMEAPKENKTNEKTLASSVVVILDHLQVIRIVIVHLKMDQMLVIDKVCWRLL 636
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03273 636 MobiDBLite consensus disorder prediction 463 495 - -
Cien5g03273 636 PRINTS Bromodomain signature 378 397 IPR001487 GO:0005515(InterPro)
Cien5g03273 636 PRINTS Bromodomain signature 328 341 IPR001487 GO:0005515(InterPro)
Cien5g03273 636 PRINTS Bromodomain signature 360 378 IPR001487 GO:0005515(InterPro)
Cien5g03273 636 PRINTS Bromodomain signature 344 360 IPR001487 GO:0005515(InterPro)
Cien5g03273 636 Pfam Bromodomain 317 401 IPR001487 GO:0005515(InterPro)
Cien5g03273 636 Coils Coil 561 581 - -
Cien5g03273 636 MobiDBLite consensus disorder prediction 571 588 - -
Cien5g03273 636 MobiDBLite consensus disorder prediction 1 75 - -
Cien5g03273 636 Gene3D - 291 421 IPR036427 GO:0005515(InterPro)
Cien5g03273 636 ProSiteProfiles NET domain profile. 484 565 IPR027353 -
Cien5g03273 636 PANTHER OSJNBA0053K19.4 PROTEIN 23 597 - -
Cien5g03273 636 MobiDBLite consensus disorder prediction 279 309 - -
Cien5g03273 636 MobiDBLite consensus disorder prediction 31 75 - -
Cien5g03273 636 CDD Bromo-plant1 313 411 IPR037377 -
Cien5g03273 636 Coils Coil 135 169 - -
Cien5g03273 636 Gene3D - 487 567 IPR038336 -
Cien5g03273 636 MobiDBLite consensus disorder prediction 10 27 - -
Cien5g03273 636 MobiDBLite consensus disorder prediction 481 495 - -
Cien5g03273 636 MobiDBLite consensus disorder prediction 570 594 - -
Cien5g03273 636 SMART bromo-6 306 416 IPR001487 GO:0005515(InterPro)
Cien5g03273 636 Pfam Bromodomain extra-terminal - transcription regulation 494 555 IPR027353 -
Cien5g03273 636 ProSiteProfiles Bromodomain profile. 325 397 IPR001487 GO:0005515(InterPro)
Cien5g03273 636 SUPERFAMILY Bromodomain 296 421 IPR036427 GO:0005515(InterPro)
Cien5g03273 636 MobiDBLite consensus disorder prediction 266 309 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03273 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:78258165 Cien8g00474 Cien-Chr8:9904912 dispersed
Cien Cien-Chr5:78258165 Cien7g02517 Cien-Chr7:37990196 transposed