AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03294 ATGGCTACCAGTTCAGTTGACATCGAGAATGTTGAAGAATCAAAAGTTCATGTTTTCTCATCATCAACAGAGTTGCTTGAGAAGTTGCATCAGAAATGGAATTCAGTTGAGAAGCCGCCATATCCTGCAATGTATTCTAGTGTTTACGGTGGAATTATTCTCGATCCAGCAATGATGGTCATCCCAATCGACGATCACATGGTGCATCGTGGGCACGGTGTGTTTGACACCGCCATAATTCTCGACGGATACCTCTACGAACTCGACGGTCATATAGATCGAATCCTCGTATCAGCATCACGCGCCAAAATTTCATCTCCATTCCCAAAATCAACCCTTCGCACAATTCTCATCCAACTAACCGCAGCATCAAATTGCAAAAAAGGAACTTTACGATACTGGTTAAGCGCCGGTCCCGGTGATTTCCTACTTTCTCCTTCAGGTTGCCCAACTTCTGCATTCTATGCAGTTGTAATAGACGAAGAGTTTTCTCAATGCAAACAAGGCGTTAAAGTTATCACTTCCACAATCCCGATGAAAGTACCTCTATTTGCCACAAGTAAAAACGTGAATTACCTCCCGAACGTCCTCTCGAAACTTGAAGCAGAAGAGAAAGGGGCATTTGCGTCAATTTGGGTAGATGATGATGGGTATGTAGCCGAGGGTCCAAATGTAAACGTGGCGTTTGTGACACACGATAACGAGCTTATTTTGCCTTTCTTTGAGAAGATTTTAAGTGGGTGTACTGCAAAAAGGCTTCTTGAGTTAGCTCCAAAGTTGGTTGAAAATGGGAGATTGAAGAGTGTGAAAACAGGGAATATAACTGTTGAAGAAGCTAAAAAAGCTGCTGAAATGATGTATGTAGGAAGTACGTTGCCTGTGTTACCAATTATCGAGTGGGATGACTCGCCAATTGGAAATGGGAAGGTTGGGGAATTGACAATGGCGTTATCGGATTTGGTTTGGGAGGATATGGTGGCGGGTCCTGAGACACATAGGTTAAAGGTTCCTTATGTGTGA 1020 43.33 MATSSVDIENVEESKVHVFSSSTELLEKLHQKWNSVEKPPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILDGYLYELDGHIDRILVSASRAKISSPFPKSTLRTILIQLTAASNCKKGTLRYWLSAGPGDFLLSPSGCPTSAFYAVVIDEEFSQCKQGVKVITSTIPMKVPLFATSKNVNYLPNVLSKLEAEEKGAFASIWVDDDGYVAEGPNVNVAFVTHDNELILPFFEKILSGCTAKRLLELAPKLVENGRLKSVKTGNITVEEAKKAAEMMYVGSTLPVLPIIEWDDSPIGNGKVGELTMALSDLVWEDMVAGPETHRLKVPYV 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03294 339 Gene3D - 12 159 IPR043131 -
Cien5g03294 339 Pfam Amino-transferase class IV 73 300 IPR001544 GO:0003824(InterPro)
Cien5g03294 339 CDD ADCL-like 65 321 IPR017824 GO:0008696(InterPro)|GO:0030170(InterPro)|GO:0046656(InterPro)
Cien5g03294 339 PANTHER AMINO-ACID AMINOTRANSFERASE 35 329 IPR050571 GO:0019752(PANTHER)
Cien5g03294 339 FunFam D-alanine aminotransferase 161 328 - -
Cien5g03294 339 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 49 326 IPR036038 GO:0003824(InterPro)
Cien5g03294 339 FunFam D-amino-acid transaminase, chloroplastic 21 159 - -
Cien5g03294 339 Gene3D - 160 329 IPR043132 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03294 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:78628210 Cien6g01853 Cien-Chr6:77805934 dispersed