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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03303 ATGGGTCGAATATTTTTTGTGGAGTTGGAGGGAAGGACTTACAAATGCAAGTTCTGCAAAACAAATCTAGCTCTTGCCGAGAGTGTCGTTTCCCGGGGATTTCATTGCCGCAGAGGAAAAGCATACCTATTCAGCAACGTGGTGAACGTGACAGCTGGACGTATTGAGGAAAGGATGATGCTTTCTGGAATGCACACTGTTACAGATATATTTTGCGTATGCTGTGGACAAATTGTTGGCTGGAAATATGAGACAGCACATGAACAATCCCAGAAGTATAAAGAAGGCAAATTTGTTTTGGAAAGAGGAAGGATCATAGATGGACTTGATTCAGAATTTTACATCGATACCCGCCCGAGTTCAAGTGATGCTGAAGAAGCTTAA 384 42.45 MGRIFFVELEGRTYKCKFCKTNLALAESVVSRGFHCRRGKAYLFSNVVNVTAGRIEERMMLSGMHTVTDIFCVCCGQIVGWKYETAHEQSQKYKEGKFVLERGRIIDGLDSEFYIDTRPSSSDAEEA 127
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03303 127 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Cien5g03303 127 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
Cien5g03303 127 Pfam Yippee zinc-binding-DNA-binding -Mis18, centromere assembly 14 105 IPR004910 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03303 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr2:62717143 Cien5g03303 Cien-Chr5:78747624 dispersed
Cien Cien-Chr5:78747624 Cien8g00609 Cien-Chr8:11773424 dispersed
Cien Cien-Chr5:78747624 Cien3g03685 Cien-Chr3:92590197 transposed