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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03321 ATGTCCCCCTCCGGTGTTCAAAAGGAAAGAATGGTAGAAGAAGACATGTATGTATTATCATCAACCGGTGATATTTTGTTTACCCCATTGCCGAAGCCTTACCCTCACAAACCTCCAAAATGTTCAGATTGTGCCCCTCTTTTCATGAAGGCTTATGATAAGCGTAACGCTGGTGCAGTCATTCATAGTCACGGAATGGAATCCTGTCTTGTAACTATGATGGATCCATTAGCAAAAGAGTTTAGGATCACTCATATGGAGATGATTAAAGGAATTCAAGGCCATGGTTACTATGACGAGCTTGTGGTTCCCATAATAGAAAACACAGCTCAAGAAAGAGAATTGACAGAATCACTTGCTGCAGCAATTGAAGCATACCCAAAAACAACTGCTGTTCTTGTCAGAAACCATGGTATTTATGTATGGGGAGACTCCTGGATTAGTGCCAAAACTCAAGCTGAATGTTACCACTATCTATTTGAAGCTGCGATTAAACTTCATCAATTAGGGCTTGACTGGTCAACTCCAAGTCATGGTCCTAAACCAATTCCATCCGGTCAAAGTCAAACTACAAACCCATCTCATCGTTGCATTGTTCTTGACATTGAAGGGACCACCACGCCTATATCTTTTGTCACAGATGTTCTTTTTCCATATGCACGTGACAATGTCAGAAAGCACTTGGAACAAACATATGACACTCATGATACACAAGACGATATCAAGTTGTTACGCGCTCAAGTAGAAGATGATTTACAAAATGGGGTTGCAAATGCTGTTCCTGTTCCATCTGATGAGGCAGGAAAACAGGAGGTGATTGCTGCTTTGGTTGCTAATGTTGAAGGAATGATAAAATCTGACCGGAAAATCACATCTTTAAAACAGTTACAAGGTCACATATGGCGGACTGGATTTGAAAAAAATGAACTCAAAGGAGTTGTTTTTGATGATGTTCCTGGCTCTCTTCAAAAATGGCATTCTTCTGGTATAAAAGTGTATATATATTCAAGTGGTAGCAGATTGGCGCAAAGGCTTTTATTTGGGTATTCAAATCACGGGGACTTGAGAACGTATTTGAGTGGATTTTTTGACACGACAGTGGGGAACAAGAAGGAAACAAAAAGTTACGTTGAAATTTCAGAATCACTTGGAGTTCATAAGCCATCAGATGTCCTATTTGTAACAGATGTATTTCAAGAAGCTGTAGCTGCAAAGGCAGCTGGTTTGGAGGTGATAATATCTGTTCGGCCAGGAAACGGGCAGCTGCCCGAGAACCATGGTTTTAAGACGGTCAAGTCTTTTTCGGAGATACGTGGGTGA 1320 40.91 MSPSGVQKERMVEEDMYVLSSTGDILFTPLPKPYPHKPPKCSDCAPLFMKAYDKRNAGAVIHSHGMESCLVTMMDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAQERELTESLAAAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQAECYHYLFEAAIKLHQLGLDWSTPSHGPKPIPSGQSQTTNPSHRCIVLDIEGTTTPISFVTDVLFPYARDNVRKHLEQTYDTHDTQDDIKLLRAQVEDDLQNGVANAVPVPSDEAGKQEVIAALVANVEGMIKSDRKITSLKQLQGHIWRTGFEKNELKGVVFDDVPGSLQKWHSSGIKVYIYSSGSRLAQRLLFGYSNHGDLRTYLSGFFDTTVGNKKETKSYVEISESLGVHKPSDVLFVTDVFQEAVAAKAAGLEVIISVRPGNGQLPENHGFKTVKSFSEIRG 439
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03321 439 NCBIfam methylthioribulose 1-phosphate dehydratase 1 169 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Cien5g03321 439 NCBIfam acireductone synthase 196 435 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cien5g03321 439 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 1 181 - -
Cien5g03321 439 PANTHER ENOLASE-PHOSPHATASE E1 191 437 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Cien5g03321 439 Gene3D - 1 183 IPR036409 -
Cien5g03321 439 SUPERFAMILY AraD-HMP-PK domain-like 1 176 IPR036409 -
Cien5g03321 439 SMART Aldolase-II-2 1 164 IPR001303 -
Cien5g03321 439 CDD HAD-EP 197 418 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cien5g03321 439 Hamap Enolase-phosphatase E1 [ENOPH1]. 196 437 IPR027511 GO:0019509(InterPro)
Cien5g03321 439 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 209 305 - -
Cien5g03321 439 Gene3D - 209 304 - -
Cien5g03321 439 Pfam Class II Aldolase and Adducin N-terminal domain 1 163 IPR001303 -
Cien5g03321 439 SFLD Haloacid Dehalogenase 196 437 - -
Cien5g03321 439 Gene3D - 305 437 IPR023214 -
Cien5g03321 439 SFLD enolase-phosphatase 196 437 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cien5g03321 439 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 305 437 - -
Cien5g03321 439 Pfam haloacid dehalogenase-like hydrolase 196 408 - -
Cien5g03321 439 SUPERFAMILY HAD-like 196 437 IPR036412 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03321 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Cien5g03321 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Cien5g03321 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:78874604 Cien7g02009 Cien-Chr7:30308924 dispersed