AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03332 ATGGAGATGAATCCAGGCATCAGCCACACCGCTGTTGCCATCACGATTTCCAGAGGCGGAGAAATAGCATCGGGGGCGTCGATGGAGGCGACCGGTGGTGCGTTCAGCGGCCGGCGACGGCGAGGAGGGCAGAGGATTACAAATGATATTCCCATATCTCCCTATGAACCCCTTCACACACACTCCTTTTGTCTTCCTTTTACTGTCTCTTTTCATTCTGCTGGTTTCCCTCTTTCTCTCTCATCACAAAAACCCTCATTCCCTCTCTACAATCCAAAACCAGACATAGAAATGAGAGGACCAGTGATCGGAAAGTACCCATCAAGCGACGGAAATGGTGACGTCGGCGCCGGAAACGGAATCATAAAGTACAACCGGAAATGCAGAGATATTGTGTTTCTTGTTTTCTTCGTAGCCTTCTGGATCGCCATGATTGTTAACTCCAGCTTCGGTTTCAACCAAGGAAACCCATTAAGGCTAAATTTCGGGTTGGATTATAAAGGAAATGTATGTGGAGGCAAACATTCCGATTTTGACCTCCGTGAATTAGAACTAAAATACTGGGTGAACCCTAACCAAGTTTACCAAAGTGGGATGAAGAACAGCGGGGTAAAATTGTCAAATGCTCGAACCATATGCTTACTAGACTGTCCAATACCCTCGGAAGATTCTTTAAATTGGGTTTGTGATTATCCAGAAGGAGATATTCGTATTTCATTAGATGATTGGATCGATATGAATTATGATTATTTTGCCGATCTTACCCCTGAACTAAGAAACACTTCTCTTCAACTTCAAGGCCCTTGTTACCCCGTCATTTTTCCAAGCGTAAACGTTTATTGGAGTTGCCAATTTATTGACCGCCCGTCAAATGTTTCTTTGACTAATTGGAAACGAATGAATGGAGTTACAATCAACGATGATATGGTGATAGATAAATCTATTCATAACTCTATAAACGCACGGTCTTCTGTATTGAAGAGATATGTGGCGGATGTTGGAAAATCATGGCCCGTGTTAATTGTTTGTGGAGGACTTTTGCCTTTATTTTTATCGCTTTTATGGCTTTTAATGATCCGACATTTTGTGACCGCAATGCCTTGGGTTACCGTTTTTCTCTTTAATGGCCTCATTATATCAGTCACAATGTTCTACTACATGAAAGCTGGATGGATTGGAAACGATGCTATTTCACCCATAATCGGCGAACACGATCCGTACTATCATGTCACTTCTAGGGAGCAACATCATATCCGTGCAGCTGCTTTACTCATGACATGTGTCATGGTCGTATCCGTTCTGTCATCAATCGCGATTGTTCGCCGGATTCTCATGGCAACATCAGTGCTCAAGGTAGCAGCGAAGGTGATCGGAGAAGTTCACGCATTGATAATTTTTCCGGCGATCCCATACCTAATTCTGGCGGTGTTTTACATGATTTGGCTGTCGGCCGCCCTCCATCTTTTCAGCTCCGGCGAGATCGTACGCAATGATTGTAGCACAAATTGTTGTGCGTATGATTTGAAAGCCAAAAGGGTGAGTTGCGATGATTGTTGTGGGTATAGCATTCATTACACCAATCACATTGCAGCTTCGATTCTATTCCACTTGTTCGGATGCTATTGGGCCACTCAGTTCTTGATCGCGTGTTCTTCCACTGTAATTGCTGGTTCCGTTGCTTCTTACTATTGGGCCCGCGGTGAATCATCGACAACGATTCCGTTTCTTCCCGTTTTCTCCTCAATGAAGCTACTCACACGTTACAGCCTCGGATCCGTAGCAATCGGTTCCTTAATCGTATCGTTTGTCGAGTCAACTCGGTTCATACTCGAAGCCATTCGTAGGAGACTAAAAGTCGCTGACATCATGCCCGAAAACTTTATCAAAAGAATGATGTTTCACACTTCGCGGTTTTGCTTAAAGGGCATCGAATTAACGATAAAATCCGTAAACCGGAACGCATACATTATGATTGCGATAACGGGAAAAGGGTTCTTCAAAGCTTCAGAAATAGCAACGAATTTGATAATTAGTAATATTTTGCGTATCGGAAGAGTGAATGTGATTGGAGATGTTATTTTGTTCCTTGGAAAGCTTTGTGTGAGTCTTGCTAGTGCGCTATTCGCGTTTCTTATGTTGGACACTCATAAGTACAAATCGTCTCACAACAAGATCACATCCCCGTTGTTTCCCGTAATGGTGTGTTGGGGATTAGGGTATGTGGTGGCGACATTGTTTTTTGGGGTGGTGGAAATGTCGATTGATACGATTATTCTTTCGTATTGTCAAGATGCGGAGGAACATCAAGGGACCGCGCATTACGCGCCTCCGCTTTTGATCGAGACTTTTGATGAAGAAAATGAGGTGCAAAGAATTGGACAATGA 2385 43.56 MEMNPGISHTAVAITISRGGEIASGASMEATGGAFSGRRRRGGQRITNDIPISPYEPLHTHSFCLPFTVSFHSAGFPLSLSSQKPSFPLYNPKPDIEMRGPVIGKYPSSDGNGDVGAGNGIIKYNRKCRDIVFLVFFVAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHSDFDLRELELKYWVNPNQVYQSGMKNSGVKLSNARTICLLDCPIPSEDSLNWVCDYPEGDIRISLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWSCQFIDRPSNVSLTNWKRMNGVTINDDMVIDKSIHNSINARSSVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHFVTAMPWVTVFLFNGLIISVTMFYYMKAGWIGNDAISPIIGEHDPYYHVTSREQHHIRAAALLMTCVMVVSVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPAIPYLILAVFYMIWLSAALHLFSSGEIVRNDCSTNCCAYDLKAKRVSCDDCCGYSIHYTNHIAASILFHLFGCYWATQFLIACSSTVIAGSVASYYWARGESSTTIPFLPVFSSMKLLTRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADIMPENFIKRMMFHTSRFCLKGIELTIKSVNRNAYIMIAITGKGFFKASEIATNLIISNILRIGRVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVMVCWGLGYVVATLFFGVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEENEVQRIGQ 794
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03332 794 Pfam Plasma-membrane choline transporter 424 766 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cien5g03332 794 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 120 786 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03332 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:78976847 Cien9g00434 Cien-Chr9:7240779 dispersed